Accession: EG_PFI0240c - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = EG_PFI0240c (Len=2563)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFI0240c, Len=2563):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAKLSLTINNVDDDLKRKIKKAKFEGVEDLKHKNKKLTISYNPKVVDSYGVIERIKHLDINGEILKDDNDISSKNGNSFT 80  
WD40-rpts                                                                                      

Query       81 FSMYKEGVEENVVKKANIFDDNENMQNTNNYIDNNSNNCNNLYGINNRDNYDKLDCNGNNADNNFDQIYDMNNMVNNYTY 160 
WD40-rpts                                                                                      

Query      161 PNGEDLYEQLDNAYDDKNYKDNYKNYETNHQKCEQNYKNYEAIHQKCEQNYKNYEANHQKCEQNYKNYESNHQNHEQNYK 240 
WD40-rpts                                                                                      

Query      241 SYGDNYQNCNVSEKNENINSNYNSTNNKGDLYDINYYPNQVEKVEESEGVDENRKSSKFSVLNLFNNIKKSKDKKKMKKE 320 
WD40-rpts                                                                                      

Query      321 IKKDYLNEDYNNLDKRILLSNDMYKNVENKNYNNSNDNYNSNNNYYYDYNEEKLKKKNFNFRDYESYRDKQNIYICELKI 400 
WD40-rpts                                                                                      

Query      401 YNMTCDNCGKKIINFLKDKKLILEGNSFATDNKIKLKIDISSDIIHCNNNVKMFVNTIMNEIKESGFNNDLLDLYKDDKN 480 
WD40-rpts                                                                                      

Query      481 RCNLSEITLYIYRDDIKKSYKLLKDIKGISNVEYDLKKEYIYFLYDPELVGIRYILEILKKKKNVDAYYDEDKEKYFRSS 560 
WD40-rpts                                                                                      

Query      561 QNNETNNTWKLIELSICIIISIIIIVLNKYQMNMGSMNGFYSYTKKLFDNSNKIDTDNIKHPSIYHNIGNGTPVDQSTLD 640 
WD40-rpts                                                                                      

Query      641 IYFENVTKGKTLNEYVHKQSRRDEKGTFFINSNFKFIKKNKDSPINRKWVDDDIKKGQILNGKKNKSIEYNNTINMLNDQ 720 
WD40-rpts                                                                                      

Query      721 IDAGHYNNQEGHKDYPLDNENNVSKYIECTNSENRRKNYLLNEKDDDDNNKEKNINNNDNNNDEKNDNFNNDYNKDDYYD 800 
WD40-rpts                                                                                      

Query      801 DEHYDIIPIGDFRKSDISEKHPDNKKGDNTKNGYSRFRKHINTNLKNKNNKNESDGEEEKGNIDGIYILKQKNHKKDMIK 880 
WD40-rpts                                                                                      

Query      881 GEEENKDNFSKKEEKSDNENSNEEIDKNYNYLKRKEKDHNSSNDEDNINDSVLKENVKEEEIHESSSNEQSDSYLKKIEK 960 
WD40-rpts                                                                                      

Query      961 KDNKNISVDNNENDNFLKKKEMKDVNNENEENRESSSLLKENKKKDNKNISVENNENDNFLKKNEMEDQNNKHVGSNVGD 1040
WD40-rpts                                                                                      

Query     1041 IVLKKNKKKDNKNTNDENNENDNFLKKKEKLYNNSSNEQNEENENFLKKKENTDNKNTNIQDKQNAIFLKNKKKKDDKNS 1120
WD40-rpts                                                                                      

Query     1121 KEENDESDNFLKKKVRTEDKNTNGQDKQDDIFLKNKQNDNVKSSHDQDNQNDDTFLKKKKIKDKNDNSNDEGNVSSLMLS 1200
WD40-rpts                                                                                      

Query     1201 KKEDENKSKNKKCDTNNSKDNIGEDNLGVSKEQDGKDSQDVKGGKHGQDVKDDKDEQDVKGGKHGQDVKDDKDEQDVKDG 1280
WD40-rpts                                                                                      

Query     1281 KHGQDVKGGKHGQDVKDDKDEQDVKDGKHGQDVKDDNDEQDVKDDKDEQDVKDDKDEQDVKDDNDEQDVKDDKDEQDVKD 1360
WD40-rpts                                                                                      

Query     1361 DKDEQNVKDDKEDKDIKGGKHGQDVKNDKHGQDVKNVKHGDVVKDGENENDSYDETEEDNFLMKKKEKKDENSTKDEKEN 1440
WD40-rpts                                                                                      

Query     1441 IVMRKNKNSEISNEENNATYENENIFMNKNKSYNNSYKNEGNDDSLFSFNNLFYKLANYSIYLDMDTKIVKGLSLRLFFI 1520
WD40-rpts                                                                                      

Query     1521 FVLSSFVYIYYGFSFVLNGYKNLKNNMINMNVLISISSSFSYFYSLLLLLFCLIFSIDLNGIPLYFDSSALLICIMKFGC 1600
WD40-rpts                                                                                      

Query     1601 EIENFLVSFSKKKMEDLYESTAKNVYILEKKNRYYQDEEGNFNSNIPIKSMSNISKAFSKDNNSNSIIANSQINSNDILQ 1680
WD40-rpts                                                                                      

Query     1681 SVGKENIKVDTLKNNLSFSTSSFFLSNQFLYDDDEINKILSQDMDININDYNINSYPVQFIQKNDILIFYEGSTLLIDGI 1760
WD40-rpts                                                                                      

Query     1761 KINKGISCVDESMISGEKNAIKKYKGDKVYAGSKCVEGVVIIYVKDISKGNYIEYVKQTLDEINCKKTNLQLYADKIASI 1840
WD40-rpts                                                                                      

Query     1841 FIPFILILCIVVFFIWFILTFFDIVNIKKENYFKLNRFLSCVFFSVHFSLSILCVACPCAVGLASPLSIAISTYICSSIG 1920
WD40-rpts                                                                                      

Query     1921 IIIKNINIFEIFLECKHFIFDKTGTLTVGKPVVNKIYISNNIDLFIDQLLKNKSGNHLSVSFNDNKNAKMPALVRAKSDE 2000
WD40-rpts                                                                                      

Query     2001 KKVKKMNNNMKDNVNKLYSTAYSINDQPSNGYNGYMNNFDEQGLEGNENMMKNNTLNFVENFSCCNKNVSFYSFTTEKEY 2080
WD40-rpts                                                                                      

Query     2081 FKIEIKKTSRNRDKVKKKKKYTKNETRNNYDESSLSGDKNYQNYQNYQNDQNDQIVSNSCMGENKSILNSIVSFITDKNK 2160
WD40-rpts                                                                                      

Query     2161 KNKYNKILDNSLKEHFINNSDNYFSSNDDSYYSETTSNENEHNKYDNIPVSNNIMDQHDHLQNMSSPLEEENSYMEKSSD 2240
WD40-rpts                                                                                      

Query     2241 WLYLFLSLSLNIEKYSNHLFATSINTYINNNFSINEVFDVNNLKNEKNQGISCIINDLTITIGTLFFCYTKYKNIYCNKV 2320
WD40-rpts                                                                                      

Query     2321 PIIEEKLTVKSMERHIYSCDCNVHKTYQYLYSYSNSKKNESNNIIFMCIEGIVVGFFTLVDNIKPEVFELINFLKREKKK 2400
WD40-rpts                                                                                  (___

Query     2401 VYVCTGDNYMNALYISKILGIKKENVSSNTLPLEKVQFVKKVQSMNDGKVCMIGDGINDCFALKTADLGLSLCTRTNVVM 2480
WD40-rpts      __________________________________________WD 1__________________________________

Query     2481 DSADACIVDNNINVIIKLFEISRKTLLVIKFNFLFSFFINIFFILLASGAFYSLNYVFSPFLFTFLMFCSSIIVILSSLS 2560
WD40-rpts      __________)                                                                     

Query     2561 LKL 2563
WD40-rpts

1 WD40-repeats found in QUERY=EG_PFI0240c (Len=2563):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 26  2397-2491     4.19  287.83  0.00820       22.5%     15.03

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 2397-2491   EKKKVYVCTGDNYMNALYISKILGIKKENVSSNTLPLEKVQFVKKVQSMNDGKVCMIGDGINDCFALKTADLGLSLCTRTNVVMDSADACIVDNN

   WD40 Template    TGECLRTLSGHT-------------------SGVTS-----------------VSFSPDGKR-------------LVSG------SEDGTIKVWD