Accession: EG_PFI0210c - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = EG_PFI0210c (Len=2487)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFI0210c, Len=2487):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSCINKLPLFIILIIYETLNKNWGAKNYYSQLNKGIYPRLLNVKCRAGESLTYDYKCDKCKEGFFNFSRDNKKCSPCPIG 80  
WD40-rpts                                                                                      

Query       81 TFSSYVGSIICENCPYGSTTKSIGSKSISDCVCNKGFKLSSYLNGGNKCVPCNSQEYCKSNENTWCFRNMCLKDKNKENI 160 
WD40-rpts                                                                                      

Query      161 KLCKKVKKKSIYNYEILCFKKGVCLNVKEKNSCLEGNKMIQCKICDENYRYNFLAPLQQPCVLCNMSTYFIIFFFAIFIF 240 
WD40-rpts                                                                                      

Query      241 VISIFIAMCINNEKEKSIIQLFFTYIQFVSLLRYVNSNYDHYLVKFLYFFTFGIPINEFLDCVFKRGSNLERIQKKITFL 320 
WD40-rpts                                                                                      

Query      321 LYLPLLILICSLLCTFVITLFYKNVKRREDVTICPFDKNYKQRSKKKHINKVDNSNVNNNNISEYKKKKDCSKRNEINII 400 
WD40-rpts                                                                                      

Query      401 DMNDRKEMNFCDSNNLFINEISQPKKFHHNIYSDDNITRCNLFSAENYVRSFLFFFIFYHDLIYIEIIKLCVLFCLCNYD 480 
WD40-rpts                                                                                      

Query      481 EHREESFIIIDDSINCEDMKSSYYKIMIIIIYNTFMKFFYLYFFQLLRKYVKRYQAVIDEYIILQQKAKIINKKDTLFLI 560 
WD40-rpts                                                                                      

Query      561 IFIILFHKKFWITINPSLYYNYKNGLYNNNIHIFQFMIIIISFSIYVLIIHICVYERKDPHRFFFDIHTIEKGKKKKKNV 640 
WD40-rpts                                                                                      

Query      641 SNTRDCFDNDEGNKMCHMKLYSSCRIRNNKSNICHSVEKNNIKEYDKKEKEITNKRNNMWYHFFIILFQNVKKKDTFLYS 720 
WD40-rpts                                                                                      

Query      721 FSCLIYTTILLFYYTFLCYVHIKNFIKIITIISILCNITIYFVFILFFLINHTIKKYNFSKKIIYIISFVKKRKRKWLGI 800 
WD40-rpts                                                                                      

Query      801 YRKFKTLIWGNRKKMEDTYSRVKNKKGIENEQKKEQKLKSLLLMSNVLNYYTDDEESILNTKNNNVKKKNNNIFMVKKWN 880 
WD40-rpts                                                                                      

Query      881 VNNIKRHKLLNISEIWIHYLYNIISLSNEPQKCLSILIKLTLEKKYPLISLKTCIHVLRKNHFFETDNFLIILKNFLKFT 960 
WD40-rpts                                                                                      

Query      961 KKFVKVLRRKKYEQSYEYLIIYAWGMSILNYGNLRDINYNISHILFHVYSILNKCRFYKNIVEHFFNIYPYVNNNAMKGN 1040
WD40-rpts                                                                                      

Query     1041 MSLINMYNNMCNFSFDKNNLYEEEKQSQKIKNNILIEQNFLDDNVNMDIKDDPCDEIEDMNMLQMYGNSFCQSFMPLYNH 1120
WD40-rpts                                                                                      

Query     1121 NFNRKNDQSIHMEETYMCDRERFNCLDKYMCSNTYINKRNSETFVNAHKGEYKYDISSDMNLIDYKKQSTRTKNFKGQRI 1200
WD40-rpts                                                                                      

Query     1201 FYHIHSLYIIELARIFIHCLLLDVSEFFFKIYHTHICEKYICNNLINLWGCYRNQNIYMKRFFEYIKKGEYKNQQNIIRY 1280
WD40-rpts                                                                                      

Query     1281 NICSIINEKRDDNNNNIDNTDNIDNILSITDFINKKVLDIDFYNEYEKLSKNSKHYFINISEEKDYLNINELINFSKASD 1360
WD40-rpts                                                                                      

Query     1361 NIEELKRLQNNLIEKRNKKKLKIFSLIFCSAMPVHIIDDYEMYLDEDDIKLIKERKRNFNILLENMSEQIMDQYVKENYN 1440
WD40-rpts                                                                                      

Query     1441 DKKYYFEMCNYGSSLNIRGEFLEAYSKKIVSEKNKNNIKELKTNIIDIKHIYNKGDDEDTDNLLNIKYIDILNKNKNDYM 1520
WD40-rpts                                                                                      

Query     1521 NYQYIKEYNSLLLIHNNYKGCVGITGDLKGMNFYHSNASIIINPCIPLPTECTIELWLCCNPKKKYRNISGKKFAFCDKK 1600
WD40-rpts                                                                                      

Query     1601 GNSLFVLSLNEDGLEDIEIYITNVELLSDYYKKMNYIQDIKTATHYHRLKDISKVLNYNNGIYIKSNMITKKCKKYKKYK 1680
WD40-rpts                                                                                      

Query     1681 IYKIYKIGKNYNMRNNIIKKKKWNLINITKSSQGLVYYINGKYISFISHEILNMQKTFEICLFGNSCFGNNNIGICSSFK 1760
WD40-rpts                                                                                      

Query     1761 IFNFLNKEEIKCRYKIIKNIKCKEMLGDNIKIQDDNNNNNNNNYNYYNYNNFVIEGIDVRETKPAEIIFLINFIQSSKYT 1840
WD40-rpts                                                                                      

Query     1841 NRVIPFINDSNYMLKIYQLKFFDIYKNNINLSNMNYYEDICDKYNDFSEGTKKHIIHHNSNQNISCWQEEKSKNVDMVKK 1920
WD40-rpts                                                                                      

Query     1921 KNIYINYNNDDNIINNYSSIDCRIIHIKNKDHYGYNVYVKKIIGRQDVPKIYGINIFSHNFGLACDLSKFYNLIISPSLS 2000
WD40-rpts                                                                 (____________________

Query     2001 IYNELQKTLGYSICAWIFLPIEKSISYSSLIAGKKDIHVCIFSDDMLLGSIQNYTSKGNLLFYHSSGYSIKNMKRGWYYL 2080
WD40-rpts      _________WD 1_____________________________)                                     

Query     2081 NVIGTLQGQYYFLNGKFKGYHTFCSFDNIKYICNSSLFINPFPYICFLKILNKPLSMNEVLYEFYTFSKLFNETSYESYN 2160
WD40-rpts                                                                                      

Query     2161 LHYIIHFLFPYFESKNKNNISYSSNDTSLCNSYDHNCSEGKYLHFYITENYDVHIYPIEQVKNYYYSVSLISIKNRKLYY 2240
WD40-rpts                                                                                      

Query     2241 FNSINEQSNNLNIHLKNYIILPEHHWTILAVINLTHINKLGYHCLVGGTNGNSHICINGFDLSIGVLINLQNEYIYEEQL 2320
WD40-rpts                                                                                      

Query     2321 SLEDSFTSISDTLNGFSLLNEYMKVDSITKEKNNNNNDDDDDDLLCNSYDKKINKYNNNVSDFDNVHIRNANKSYSTFCG 2400
WD40-rpts                                                                                      

Query     2401 CGYNLQNELNKNILITTTCRNYEQTFFINSTKVGITQACLDPITCIGNCASINNEFLSPFGSYKFLRIIFDYVSDEQIRQ 2480
WD40-rpts                                                                                      

Query     2481 FYYSLKL 2487
WD40-rpts

1 WD40-repeats found in QUERY=EG_PFI0210c (Len=2487):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 49  1980-2043     3.09  242.42  0.03316       20.0%      8.33

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1980-2043   NFGLACDLSKFYNLIISPSLSIYNELQKTLGYSICAWIFLPIEKSISYSSLIAGKKDIHVCIFS

   WD40 Template    TGECLRTLSGHTSGVTSVSF------------------------SPDGKRLVSGSEDGTIKVWD