Input parameters:

  Query = EG_PFF1480w (Len=498)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFF1480w, Len=498):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSEKNKGKKKKNSLSDKMENDISSVDEEIDFENESDDYDNNNNDEFYEDDDLIDDDENNFEDDDVVVHNNPNDNCEKEIQ 80  
WD40-rpts                                                                                      

Query       81 ICFFTNIENEKYKIDSSTYTVPVTFKRIDLSRMVKKLLDIEDNVSFEFLINKKILRTTIEEFIRDHNILSENVIEIEYSI 160 
WD40-rpts                                                                                      

Query      161 SLRKRESKNIDKICEWIFELITIGNKLYCSTFDGTLLYYDMLNFRKIYEKKVIDNMPVYSYNIYKSKKLHNELIYNESVI 240 
WD40-rpts      (_________________WD 1_________________)         (__________________WD 2________

Query      241 GLTNGSIKVFLNEEKEKEIITRNELYLGNHIDMIKCISFNKDYSMLLSAGNDNKINIFDNNYIINELLNDLTNEHNTNKR 320 
WD40-rpts      __________)         (_________________WD 3________________)                     

Query      321 KKKSVVFPKKCIHNDSGMITSLKFFDNIKFLSTGLDKNIKIYDLTSSYVSCSYSYNKSIICSDILNNNLFITADEHSMIK 400 
WD40-rpts           (________________WD 4________________)   (________________WD 5_____________

Query      401 LFDVRNTNEKPVLSLNENKYHMHDKIITSLKTNKNEIYFLSSSHDGYTNIYDIRLNNLPVYTFQSNEKSKILSSTWFYND 480 
WD40-rpts      __)          (_________________WD 6________________)    (__________________WD 7_

Query      481 EHNCVVNAEENNLVLHIF 498 
WD40-rpts      ________________) 

7 WD40-repeats found in QUERY=EG_PFF1480w (Len=498):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   161-200      6.48  382.44  0.00044       15.0%     39.57
  WD 2:  Seg  9   210-251      5.54  343.50  0.00146       15.0%     38.31
  WD 3:  Seg 12   261-299      8.61  470.22  2.9e-05       25.0%     54.19
  WD 4:  Seg 16   326-363      5.92  359.21  0.00090       22.5%     48.34
  WD 5:  Seg 20   367-403      5.76  352.70  0.00110       17.5%     48.67
  WD 6:  Seg 24   414-452      7.94  442.47  6.8e-05       20.0%     45.04
  WD 7:  Seg 27   457-497      4.69  308.19  0.00437       12.5%     53.42

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  161-200    SLRKRESKNID-KICEWIFEL---ITIGNK-LYCSTFDGTLLYYD
   WD 2  210-251    -KKVIDNMPVY-SYNIYKSKKLHNELIYNE-SVIGLTNGSIKVFL
   WD 3  261-299    -TRNELYLGNH-IDMIKCISF---NKDYSM-LLSAGNDNKINIFD
   WD 4  326-363    -VFPKKCIHND-SGMITSLKF---FDNIK--FLSTGLDKNIKIYD
   WD 5  367-403    -SYVSCSYSYN-KSIICSD-----ILNNNL-FITADEHSMIKLFD
   WD 6  414-452    -SLNENKYHMH-DKIITSLKT---NKNEIY-FLSSSHDGYTNIYD
   WD 7  457-497    -NLPVYTFQSNEKSKILSSTW---FYNDEHNCVVNAEENNLVLHI

   WD40 Template    TGECLRTLSGH-TSGVTSVSF---SPDGKR-LVSGSEDGTIKVWD