Input parameters:

  Query = EG_PFF1025c (Len=301)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFF1025c, Len=301):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENHKDDAVLLKHGWCEMLKGGVIMDVKSVEQAKIAEEAGAIGVMVLENIPSELRNKEGVARSVDPSKVEEIKKCVSINV 80  
WD40-rpts                         (______________________________________WD 1__________________

Query       81 LAKVRIGHFVEAQILEELKIDMIDESEVLTIADEMHHIDKHKFKTPFVCGCTNLGEALRRISEGASMIRTKGEAGTGNII 160 
WD40-rpts      ____________________)                                                           

Query      161 EAIKHIRTVNNEIKYLCSLSDSEVYHFAKKINAPIDLVLLTKKLKRLPVVNFAAGGVATPADAAMCMQLGMDGVFVGSGI 240 
WD40-rpts                                                                                      

Query      241 FESENPRKMAASIVSAVSNFNNPKILLDVSMNLGKAMCGSTRVSDKWKNKNEEHTKFLTPQ 301 
WD40-rpts                                                                   

1 WD40-repeats found in QUERY=EG_PFF1025c (Len=301):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    20-101      3.19  246.36  0.02940       22.5%     18.46

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   20-101    KGGVIMDVKSVEQAKIAEEAGAIGVMVLENIPSELRNKEG---VARSVDPSKVEEIKKCVSINVLAKVRIGHFVEAQILEELKID

   WD40 Template    TGECLRTLSG----------HTSGVTSVSFSP------DGKRLVSGSED----------------GTIKV-------------WD