Accession: EG_PFF0965c - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = EG_PFF0965c (Len=2507)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFF0965c, Len=2507):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKTFALLYKLNVEEDNNENETLFFSLYIHNSYIYVGSTNGRIFIFKKKGKVFFDQVNFVNVIKFATDDVITKNKEYIKKK 80  
WD40-rpts                                                                                      

Query       81 KKKKIDVIVEEDFKLPNEYHYNAITCIKYLIKKNGKHIYIFIGDIDGVLSYVLLKNGSYTSTQLKKKIRKNKQIYNKLLV 160 
WD40-rpts                                                                                      

Query      161 DKINGPISDIEICSDFILVTCEKNNILIKLDDILLYNKNEEIYYKCIGKKKENKNYKSIFLKCKRNIKSPMILSLRKNGR 240 
WD40-rpts                                                                                      

Query      241 IWISKEDKVLNTLVFYYSFFYFFYIFFFNKKLYMNNYLYEYYKNYFLSNSYFVQFLDNIINQFSNFTFPSKPNLNMFYKI 320 
WD40-rpts                                                                                      

Query      321 NKKYFVLFEQFITYPFFKKINERIDNSTDPTTDDRSKIKDMLTKDINNIKEYLKNKLNEEINNNSKKNNNNSNNSNNNNN 400 
WD40-rpts                                                                                      

Query      401 NNEEMIVCINYIYECLNEADQLLNNFLGKKLFLFNIKSIQIQDILDLNVTFLSHMKLQNVDNKDKNGINNNTSNCTSIHM 480 
WD40-rpts                                                                                      

Query      481 NNHICYNSLGDDNNVMENHQNEDNNNHNNKNNHNNNHNNNHNNNNKNNHNNNEQLEDIMFTFQSTDKQNENINVSNNDNN 560 
WD40-rpts                                                                                      

Query      561 MEETKNNEIHYKKVNSKNILYERYFKEDKIVDSFILKNKLYLLYFNKNLRDDIYVAYNMNNGHNVCTSFSGMNRSSTEKK 640 
WD40-rpts                                                                                      

Query      641 KNKIIISKDKQFSSSSNILNCNYKISPFYFCEIHFEENSGLLKYLGCNIEKSLNVKRNEFYFFYFYILMFHNYIDEKKKE 720 
WD40-rpts                                                                                      

Query      721 ENYEDNFFDIIENKMNIINIPMYIKDIIQGKYSNDMNNMNDIEFINNKNKLNHILDMTQMDNILRKNIEALKMNIRNLLL 800 
WD40-rpts                                                                                      

Query      801 YSTNEIYTCLLTDKNYIFSNYFLYPSYYHNVKEFQYLHFHIKKIKKLYNKMKIIMTRYKYIYHEILTFFVFSNDNENCVI 880 
WD40-rpts                                                                                      

Query      881 PAHLDLIKKNKKDKENEHNNRIISKYLHILQNDDQFLYKVLYYFNLFIYLEINITTYNMRNNTCLTNFPVLYVERDHVVN 960 
WD40-rpts                                                                                      

Query      961 DNIRELGKSRNCEKDKQKDKQKDKQKDKQKDKQKDKQKDKQKDKQKDKQKDKQKDKQKDKQKERKIKNEQTNIPSDLQNY 1040
WD40-rpts                                                                                      

Query     1041 FQYHDRINLTSFNNTEHSIKYKGDVGKYFIKMDKKKLQLKKSKKSCIKYTILYSSPFYYIPEELLFFHMNKFINTNPIHI 1120
WD40-rpts                                                                                      

Query     1121 NKHLCTLQILLYIFKMNGNKTLFRKRFKKWKHFKNKYIYNNEQYKILCNKKSTCVLHDEKKKNKYIFLENYELTNINKCV 1200
WD40-rpts                                                                                      

Query     1201 ININNDINNVIHPNISYYDKYRYNKIDFLKYIYIYDNIRNIYNNKYYDNIKKNNNISIVDFLNCSKQVYYYHQVIDGVYV 1280
WD40-rpts                                                                                      

Query     1281 VHINNYKQQIYESFLLYQYLLDRSSFYNNLSHFSSDQRFNASNYIMKSLTFIKENKMKEMNNNIYIKEPHLNEPNIMSME 1360
WD40-rpts                                                                                      

Query     1361 DIKYYEKLNKQIINDNILLLDIFLSTYHNIYNNSKMELKNAIKKFSTFNTLGEYINYIQQNENLTDDNIYNFVKERNKKN 1440
WD40-rpts                                                                                      

Query     1441 LFLYIYKNEHITNQYDQSNFYHLSLSYNNSFYYKHYDNMNLIDLISYNNNVDNNICLKNYEQNKTSSFFFKEYKQEYMNV 1520
WD40-rpts                                                                                      

Query     1521 PNKRKQNKIKISMIGTSLVEKKKKINKKKKKKYIWINSYKDNKILNYMNDLNVVINEYISLNKKYNCDNLSFYMMNPTFF 1600
WD40-rpts                                                                                      

Query     1601 TDINFYQLIKLLYILCKEKYMYYFCTKTRKYKSKINYIIKNYDELSYHPTNLQNSRTNQYRINRKKLKKYMYQNLFMLNN 1680
WD40-rpts                                                                                      

Query     1681 ETCKNDEHASFVYKQNFKEKKKNRKTNPLLIYMNEKFCIDLLIYLQKNYIINKCMRKKRKTLLILLFKISYVFICLKWKE 1760
WD40-rpts                                                               (______________________

Query     1761 AFCLLLNIFKNENDEILYALLILCKYPLFPKSTKIEKSDKKKNKKHNNKVWTKNVTRKIKNVDGNISLLFAHKLFNNIYD 1840
WD40-rpts      _____________WD 1__________________________________)                            

Query     1841 NFVRILRTNKMKYENIILSSILYVKNDSSNFLLIIIMIIFFFFFKKAYFIESLFKDNRRKNILRNYYLLECFFFKTKKIL 1920
WD40-rpts                                                                                      

Query     1921 FLQKNQMFSLSSFKSFNTNGYELFAHDMFLKYTFQICYELINFKDMNNFLVLINNTLYFHFVKLILYLDTQNCCLNISKY 2000
WD40-rpts                                                                                      

Query     2001 HHVFFIMLSYFYIGYFMSINKCLQKFDHIFISILYKFHMLKEEDVEDIFNSSEDIKDRLKDKQMFVIKKGAKNKEKEINI 2080
WD40-rpts                                                                                      

Query     2081 FINDIKNFEEHEFVKNQEPTIFEKKKDDSIIKENIIKTNSFIILDKYNEQEKQTSNILNNNDGIYNNNYILSFPLIPLFY 2160
WD40-rpts                                                                                      

Query     2161 PHHKPPLFLKNEQEENKIYYSINYLINFFYQLLTKYLCELDYKMYNTKIDLYILQNSKNSDLYLKINKFVNSFYGTCTLL 2240
WD40-rpts                                                                                      

Query     2241 YGIYNEKIDNGNNNNNVHQNYNTDKYYNIYNSKKYHNDNTNKKNHSDIYYRNVAYNTKMKIWDEKNPIHLFIQTIDLFFS 2320
WD40-rpts                                                                                      

Query     2321 IYYTLFTLGLSLYEKKKIYVNRKKQYKKYLLSIICVLFFNITNNEISTKDTLIFYKHNMDNNNNNNNNNNNYCYNNNYYN 2400
WD40-rpts                                                                                      

Query     2401 CYSHFFSKRNIIKREKYLNVICCVLCIIHFINYFKYVKKNIIKKFIFIIDYLLFNHNSFYFKEDYQKCTNSEKKNKKIHI 2480
WD40-rpts                                                                                      

Query     2481 HNIYKTIIRNLPKHVKSFTKDKEKDTN 2507
WD40-rpts

1 WD40-repeats found in QUERY=EG_PFF0965c (Len=2507):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 63  1738-1812     2.77  229.06  0.04977       25.0%     16.80

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1738-1812   KRKTLLILLFKISYVFICLKWKEAFCLLLNIFKNENDEILYALLILCKYPLFPKSTKIEKSDKKKNKKHNNKVWT

   WD40 Template    TGECLRTLSGHTSGVT-SVS-----------FSPDG-----------------KRLVSGSED------GTIKVWD