Accession: EG_PFF0745c - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = EG_PFF0745c (Len=2733)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFF0745c, Len=2733):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNELGTHIVHKKIKRTKKKKNRGEFSYIFFKKEIAKLYEKEKIILMNNQFDDNNNNNNNNVPTENINISNKGSKSHLVKV 80  
WD40-rpts                                                                                      

Query       81 VKKVEQNFLPKFINYNKDKIKLCKNFKEVTNNTYDDKMGFKDKQNVEHTILNIPRKSTLLSEDNKNDDKKKQHKREQKKK 160 
WD40-rpts                                                                                      

Query      161 QKNKKTKKNNILSSNLSASLSCNDHDDILKKNWKEEDEKHKLVIELLKIIVTKKKIEHIRKTIFESSMLNFVSTKMVKYI 240 
WD40-rpts                                                                                      

Query      241 IRKIQKKIDFSTLKVFLVCNVDINCLNNTIVTNRKIEMLVNYIFSKKKIKIVESLLINLFKSIPQSDQFEKTFKELIVTK 320 
WD40-rpts                                                                                      

Query      321 YDYLLCVSLFSSYLINKEKSSKDADKYEQIYLLVKKLIRSEELSKGDAHKNETVRNEPSNDITNNQGIDNHSLKKKKKKK 400 
WD40-rpts                                                                                      

Query      401 KKDDKNNNNINNNNNNNKNNNNKNNNNKNNNNKNNNNDNNNNDNNNNNNNNNNDCNYNHYSGLYVDKKSCVLTSSTPNVK 480 
WD40-rpts                                                                                      

Query      481 VIPNKSNLLSFKNDYLNITNEINEKDGVDNSRELNCLLKNLNDALKKKDEEIKHLNESIYILQQNMNNLKVENEIIKKKI 560 
WD40-rpts                                                                                      

Query      561 DKINILSNDENTNSCLVSANNINIKEEHVNYLSNVEKIKYGNMKMKNNESLTNTSGDDTSNKKETFQNKLRNFMRMLKLN 640 
WD40-rpts                                                                                      

Query      641 DINNINNMDNMNNMDNMNNMDNMNNMDNINNMDNINNMNNITNNIQYDVQIQEKADVLFSSLNYHMDKIISMVNINFDMN 720 
WD40-rpts                                                                                      

Query      721 EQNKETNIQQNDHINGDILIYNKKYMNIPFNNNNINSNFHDLIQNGNHVNNMEFQHLPKLINNMEPYNKNNFNSSKVYNT 800 
WD40-rpts                                                                                      

Query      801 FVNNKCVHDKKNNNLMNDLRFFMNSSFDNMLDGNLINQDGKKTTTHYMNNNISGDNNNNNNNTDLFIINNNKIDAPLSFH 880 
WD40-rpts                                                                                      

Query      881 NKEHSPYDDNSLEEPSKIIKKKRNYFEDFMNTFNNNAKESISTDNTKFEKKQKKKKKKKTNKKKIIYEKDMNQSIKSPRL 960 
WD40-rpts                                                                                      

Query      961 SKDKSHRSDSNSDSADSVVYNYNLFNAINNLNKQFSNVVKNIHMDQTIVDKQKEQILDENIDKEKEKKKKKSKKEKKKER 1040
WD40-rpts                                                                                      

Query     1041 KRERKEKKKKRKEKRKEIREQKKIEMKEKRKKELKEKKKKIKENEQKIKESEQKIKESEQKIKESEQKIKESEQKIKESE 1120
WD40-rpts                                                                                      

Query     1121 QKINESKKKSIKSVNLDNIKKKENKKSYTSSDEHYNVNTKLKPDHEYNFIEVGTREKKAKKKQKNEFSLYDEYITQEKAI 1200
WD40-rpts                                                                                      

Query     1201 EGIINKKYIRGILNVRRSDYGFILFDNQKVHIKSKRDMNRALDGDSVVVKIKKSTDEETCGKILYIEEHNGSDIKYVCIF 1280
WD40-rpts                                                                                      

Query     1281 RDKIKNKKYNVAIPFKKNIPLIKVLNEDIIKFMNKYNICDISNQLVYIKIFVWDINDTYPEGKIVEILGQNDIFHNMQNA 1360
WD40-rpts                                                                                      

Query     1361 ILLNHNLNFNLKDALEDQYLKDLKNKDTYKQIISEQIKKRTDLTNTCIFTIDPDTARDLDDAININKISRKKIMSSNYYI 1440
WD40-rpts                                                                                      

Query     1441 QIVHNLIAHNGDIEELILKKNISLYKNDHDNNFFENLKKNTCLKDIENVKYGSFLKEEKKKKKKKNRKNKELKENTVYRI 1520
WD40-rpts                                                                                      

Query     1521 KKKDSFNNMQSSSFLSDKMNNTSQHNKNNNKFVGQQNEQLKKPKKKCTNVNTSQSMCNDIMNHIINEKKFKTDINSDEYM 1600
WD40-rpts                                                                                      

Query     1601 NNSYNDNNHKRSKKHDTVEKVDIDDDVNNDVNNDVDDDIDDDVNNDVDDDNDDDNDDDNDDDNDDDNGADDFFFTSNKYG 1680
WD40-rpts                                                                                      

Query     1681 DIIQSDTESVLNNIYDSKGAKLKQKVQRNNNNNNKIMNHNNTNVKGISIKKKNAYTEHFGSLFEDNSRDDAYKEMLTIYS 1760
WD40-rpts                                                                                      

Query     1761 NQNEKKKKNTKDNKKDNKNKYNNTHSASETNDEDIFNFISKQDDESVESKERRKKNSKYTQKEKIQDQLEEQLIRDLKNV 1840
WD40-rpts                                                                                      

Query     1841 NHIQDTNEKREDIQIEEKNRMLKFEKIFLDNSDYESILKNKKVLNDDETKEKIQKQSHEGNIKKKKKKNEKIKNKKKINN 1920
WD40-rpts                                                                                      

Query     1921 TDNENKRGTLNYETFFKNEYNKDIGYKYFEDHDLFCEKCKKYININDIINEMKKEEWNKYNLYEVGVHITDVSFFIKENS 2000
WD40-rpts                                                                                      

Query     2001 SLDIDARNRAMTIYLTHTCFPMISKILSEELCSLDPVNNRLCLSIFFYMDSSGKIDHNSFFIKESIINSKVKFSYEEVYF 2080
WD40-rpts                                                                                      

Query     2081 IIRYYVKIKQLINKLKKEKFNHILNSNKYSKLLQNDNDNMKHAHTLNAHNTINQLIKEAKHNESTKDDKDKQERQDIIKK 2160
WD40-rpts                                                                                      

Query     2161 KTSIYRRFLNLHFYKNCNKERKNSESGNSNAQDNILYEHGNVLHEQDYNLPEQNNILHEQNNTLHEQNNTLHEQNNTLHE 2240
WD40-rpts                                                                                      

Query     2241 QNHTLHEQNDIISDHIHNSSNRTFPNENNIYAQYKTHCKESKNKSEDGYICNVFPECKWNDKSDVCSNNKFVILNKKEKK 2320
WD40-rpts                                                                                      

Query     2321 KIIISNLLKIQEVKKGIDGLLKIFENLNNMNHRLTYKEMFIIIKHLYDMHKITKGARNIRRKNGSMFFNNDKINFILSNS 2400
WD40-rpts                                                                           (__________

Query     2401 RSPIGIVRKKYTFSNYMIEELMLSANKLIAIRQYFSKYRDISVFRSHNLNDAIDLNDIMDLLKKSDIHFEFHDLRQIMKF 2480
WD40-rpts      ______________________________________WD 1______________________________________

Query     2481 LDEKKKYFKQKKNNVYDIVSAYLKKKMIRAEYHTYKYIKDNNMSTYHYALSFLLYTHFTSPIRRYPDILVHRVIKKIISD 2560
WD40-rpts      _________)                                                                      

Query     2561 EQKLNQNLCTEQEILENTETPDVGILEKICENCNNCKAKSKKAQVDCEIAFFCLYLQKLSCPGYNRGIIMDIYKEKSSIY 2640
WD40-rpts                                                                                      

Query     2641 FKSFSFENNLYHSGFEKHFHKMNKDHLKYLYNYVIQPNVAKQEITVIINTNKKKGKIRRVYKVFKRKKIINVSIIYHCIL 2720
WD40-rpts                                                                                      

Query     2721 FHLIRCLHPIFWL 2733
WD40-rpts

1 WD40-repeats found in QUERY=EG_PFF0745c (Len=2733):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 33  2390-2490     2.89  234.04  0.04280       20.0%     23.07

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 2390-2490   NDKINFILSNSRSPIGIVRKKYTFSNYMIEELMLSANKLIAIRQYFSKYRDISVFRSHNLNDAIDLNDIMDLLKKSDIHFEFHDLRQIMKFLDEKKKYFKQ

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDG-----------K-------------RLVS-----GSEDGTI---------------KVWD-----------------