Accession: EG_PFE1465w.1 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = EG_PFE1465w.1 (Len=1604)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFE1465w.1, Len=1604):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNNYNGRKIFSNLEKKGDMNDILKIKKTRADKIFAFDTSGENNNIITNDKYINNGNRNVDVGNEKMFSYNMKDINKKHLL 80  
WD40-rpts                                                                                      

Query       81 KNDTYNNNDFNKKIYYDKHNSNEKNYMKVINTNINDNKNIYVDKNYFDENNLIKDRSKFRRLETFNESDKINNACAYNEI 160 
WD40-rpts                                                                                      

Query      161 NDNINDNINNNTNSNTNNNTNSNTNNNTNNNTNSNTNNNNNNNNNNIQANYNEYKMSNNNMEVYPNNIKLNYEYSKKNNE 240 
WD40-rpts                                                                                      

Query      241 KYDSYDEYEKYKNFNQRNVAFAKNNEPNMNFKYSRINRIGGNYIPPTDSRGIMISKKMSSTYHMRDKINAPIVYELNEND 320 
WD40-rpts                                                                                      

Query      321 DNMNNINNMNTLNNHSNNNNNNNNNITNMDLLKNDSIAKDSLNNDEFVENNLEKHDIPLNTNNEFARNKSMNKKNMMMNQ 400 
WD40-rpts                                                                                      

Query      401 NNLYLPHDKQMGNIIKYVVEDNNSNMEEEQVNANHMMKYHNYVNHNKERGHISNNNINNNINNNNNVGDNEANRKKEYHN 480 
WD40-rpts                                                                                      

Query      481 FSLSTIDSTYSNQNNLEKKFGSKFIDVHHHNVRKENVIDTSLQNNIDYVDEKKKLVHMEKIENKYNMMVNDTKNSDIKNN 560 
WD40-rpts                                                                                      

Query      561 DTKNKNKNNNNNNNNNNNNNNNNNNINNSSIPCGVMGIDKNNCNVVPMEYAHLSEYEYENVIKKNYKPCFKKDHMIPMDK 640 
WD40-rpts                                                                                      

Query      641 NRFMDKGDVGVVMSKNYEFNKKEGTKKIIPQEYVNDINDNMHMTNNMPYGIRKELIINDNNNNNNNKLHQDKIMINNMMR 720 
WD40-rpts                                                                                      

Query      721 ENKGNMKKNIAHFGSSPKYDESQLRRQAIKNVDKMEINYKNKNTMNYDNNDMMLIKYDNTNEEVHGMFQSDEEYDNNNLY 800 
WD40-rpts                                                                                      

Query      801 DNMKGDINMEKQYIMRNEKNLYNKKVNFKFMNDRNMKRTGHENVINPLKEGYKNNEYSTYAYKNYPSEYYPNMDNTPDRH 880 
WD40-rpts                                                                                      

Query      881 DAYDGYRGDLYLNSQYSDMEKHEDVRSYQNSYPYETQNEKGALTIIRLPAENKKQVKKKKKKSVEDSRKSLVDMYSSAIP 960 
WD40-rpts                                                                                      

Query      961 ISDNVDPNVLKALSKDENLDEKVYALIPKSVVEINEFDDITHVTLKSPSPLFVNQNMNVKQHIVTTNYYKHEDIPNIASC 1040
WD40-rpts                                                                                      

Query     1041 VVPLSDESLKESLEKSKESLSGGENDKNLKSIIRGNSLRNKSGSSLSVKFRLSKNEEKNVLTEKTDSVEKMKELNKKIEE 1120
WD40-rpts                                       (____________________________WD 1______________

Query     1121 HILSDELKNLKIDRNVTERKRASIFDDSKAKPRNEKKNETSNKIVLDSTKVKKATEIKLKKIQHVTGLLEKYDIPNPFEK 1200
WD40-rpts      _____________)                                                                  

Query     1201 YYKDSIDYSQLMGQNNNAKLFNLALTVIIYDSFNNTLCNTYKEEYFLYVSNNYYKFIVKSMERAEIKEVFNDKRKKMLLK 1280
WD40-rpts                                                                                      

Query     1281 LIVLLGNQINSEIKKKFIEANAFEPSKEQELKKEYDVKSKMSDKEKEIKMEEHNLICKYWEKQSECMSMLIDEWNKISDI 1360
WD40-rpts                                                                                      

Query     1361 LESINIDPNNIMSSLLSLYGEKTVNDFHLSLEEIKKANIELNVNTDDISIPEINEEDINKFDPSNMTILNLIEDIKWDMD 1440
WD40-rpts                                                                                      

Query     1441 LEYSLNQIREDWKNENKQNKKIIQKKIIEGIKHRVGLLDYLNKVEINLNAFAKIIEGRMISNDDVKSQLLSIQDMSEEGL 1520
WD40-rpts                                                                                      

Query     1521 LSKLLENLKCNKIDINAESFKTPTSFFVSHHLPMTVCSYSDHSNNHELKDMNETNSNADIKDDEKKVTDENDAIDTQNKN 1600
WD40-rpts                                                                                      

Query     1601 EHND 1604
WD40-rpts

1 WD40-repeats found in QUERY=EG_PFE1465w.1 (Len=1604):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 19  1074-1134     3.82  272.37  0.01322       22.5%     11.13

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1074-1134   RGNSLRNKSGSSLSVKFRLSKNEEKNVLTEKTDSVEKMKELNKKIEEHILSDELKNLKIDR

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDG---------------------TIKVWD