Input parameters:

  Query = EG_PFE1310c (Len=323)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFE1310c, Len=323):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKDTYTSIECDSLIFDIEFHPKVDMICAGSFDGNIILYKRKEDKKDFKKKHIIQNHDKAVKYVCFSKKGKEILAASSDNS 80  
WD40-rpts      (_________________WD 1________________)       (_________________WD 2____________

Query       81 CSITDISGVCIWNNICHKNSISSILYSSNHTFITADEVGYVKHWDIRDNTKKPIHKMKCFNDNITSMLMDHDEKSIIITC 160 
WD40-rpts      ____)  (________________WD 3________________)     (________________WD 4_________

Query      161 GGQLGFFDILYKKNITSNNISNEYNDEFLCSNLMVHNSKIVTTTLNGNISIFSKNPWGYMEGKIKASKDAISTFVKFDDY 240 
WD40-rpts      _______)      (_________________WD 5________________)    (________________WD 6__

Query      241 HIFFGTSDGFIKTAQIKPSKLGETFSKHNNKESIEKLSINKNKNLLAQISNDYSINFYQIEINNSIISNAIKKKKKKSFF 320 
WD40-rpts      ______________)   (__________________WD 7_________________)                     

Query      321 HDL 323 
WD40-rpts         

7 WD40-repeats found in QUERY=EG_PFE1310c (Len=323):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-39       8.38  460.91  3.8e-05       22.5%     44.44
  WD 2:  Seg  4    47-85       9.06  489.07  1.6e-05       25.0%     57.38
  WD 3:  Seg  8    88-125      8.13  450.40  5.3e-05       25.0%     54.38
  WD 4:  Seg 12   131-168      6.97  402.76  0.00023       15.0%     53.07
  WD 5:  Seg 16   175-213      7.62  429.56  0.00010        7.5%     48.52
  WD 6:  Seg 20   218-255      7.08  407.28  0.00020       20.0%     52.50
  WD 7:  Seg 24   259-299      7.61  428.99  0.00010       20.0%     58.13

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-39     MKDTYTSIECDS--LIFDIEFHPKVDMICAGSFDGNIILYK
   WD 2   47-85     FKKKHIIQNHDK--AVKYVCFSKKGKEILAASSDNSCSITD
   WD 3   88-125    GVCIWNNICHKN--SISSILYSSNH-TFITADEVGYVKHWD
   WD 4  131-168    KKPIHKMKCFND--NITSMLMDHDEKSIIITC-GGQLGFFD
   WD 5  175-213    ITSNNISNEYND--EFLCSNLMVHNSKIVTTTLNGNISIFS
   WD 6  218-255    GYMEGKIKASKD--AI-STFVKFDDYHIFFGTSDGFIKTAQ
   WD 7  259-299    SKLGETFSKHNNKESIEKLSINKNKNLLAQISNDYSINFYQ

   WD40 Template    GECLRTLSGHTS--GVTSVSFSPDGKRLVSGSEDGTIKVWD