Input parameters:

  Query = EG_PFE1200w (Len=1243)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFE1200w, Len=1243):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MITRKRKVKLDNNNNISSYINNDVNKKKNSYKNNEENPYSKRKKKINEDEHRNSSTCDVNYNKCYNDKNYFTDENISDDE 80  
WD40-rpts                                                                                      

Query       81 QNTCDNDSELSDLNDDDYVYGKRSDASSSYYKKRKKKKKIIKRKNNNNNNKTEINKKVKKEKEKEKQSSNENFPKKKDEE 160 
WD40-rpts                                                                                      

Query      161 KQPRKKKFQKKNTILEKMHNFIYQKNEYFDLDLFKYLSTLTERDEEKMNEHFSYFVISEFLNLMRLCKRGKENRNQGEVE 240 
WD40-rpts                                                                                      

Query      241 KQNIDDNIHIDDNIHIDDNIHIDDNIHIDDNIHIDEHIDCQNVKDNMINISENSEIKKEKESDISCTEVSNFISKKIFNI 320 
WD40-rpts                                                                                      

Query      321 KENIDLKCILNHDNTNWRNIFFLEDIQIHLNNKKIKVSPFSSERVVDNIKKSYLLKKKKKNNFHIKQKVKEQNHDFYNYL 400 
WD40-rpts                                                                                      

Query      401 EKIKIYINGQKKNRQEEIREERRGNNNFDIECNINRIEGNNILHPDMIVFLYFLLICNSLSNDIKENTSEEENKSITKNI 480 
WD40-rpts                                                                                      

Query      481 NEEETLNIENILDNLEEYLSKDLSSENIFLSLCCPINYMDFSDSINMVTYLTFFLNEKNVMDKNIYNKDTYPINLSYNNN 560 
WD40-rpts                                                                                      

Query      561 INNNSISGEEVLYDDKNRLENNNYNNNNNNNNSISGEEVLYDDKNTLKNNNYNRSIIKNDVTNFRYENNDNIYNEKIENN 640 
WD40-rpts                                                                                      

Query      641 IYNLINDMMMKCSEIFEGNILSISIYSYLNSDAYYNSDKPGRNFIVFYFLSKYLCKPVFIDIIEHTYMCKKMEWIKFDSL 720 
WD40-rpts                                                                                      

Query      721 NAGKGKGKGKEYIYLLLCLLGNKIKIFAISKYHFFVNIYMALKNQRNKDSSNNIYSFIKNEKRKEKKNQKKTQTKRQKFK 800 
WD40-rpts                                                                                      

Query      801 KIFTYTSSEYINDFSYTICIKDQKRYLKIALCFNNFKIKIIDIILNIVNKEENKINSFIEKSKTINISLQYGDREHYENF 880 
WD40-rpts                                                                                      

Query      881 LFFNKNQKNINQNMQSFEGNINENDELVHRYSWNKEMKKKENFFPTSWSNHNKNDDVNNHDDAINCHNVDCINDRNNNLY 960 
WD40-rpts                                                                                      

Query      961 ISDKRKFHLETHSNIRSGIKNNIYNISNNICLSNINKINIREEIIYLQHGVLSLCSFYPCINSYLLCLCSKDGNIVIIDI 1040
WD40-rpts                                 (_______________________WD 1_______________________) 

Query     1041 RNSKELFYFKRKTETCSHLKWYRNSCISFGQDKGSIINLFQNKYILNIDKSFFNTVDNSCLNSVLIGDHMYLFLYDDNTI 1120
WD40-rpts                                                                                      

Query     1121 LKGKTKENSSKNKYNEFFLWSTKCVDLEPSILLEISCMQKEDIYSVSMILLYEYLKGLQNVLNDGIKIVRSKKWDQQCTG 1200
WD40-rpts                                                                                      

Query     1201 KNRALTPKSISYASFDENYIIAYGTSCGLIHIFSQEKDENNNV 1243
WD40-rpts                                                 

1 WD40-repeats found in QUERY=EG_PFE1200w (Len=1243):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 25   988-1039     2.97  237.17  0.03892       27.5%     38.22

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  988-1039   NNICLSNINKINIREEIIYLQHGVLSLCSFYPCINSYLLCLCSKDGNIVIID

   WD40 Template    TGECLRTLSG----------HTSGVTSVSFSP--DGKRLVSGSEDGTIKVWD