Input parameters:

  Query = EG_PFE0090w (Len=1076)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFE0090w, Len=1076):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPNVYLPQILWHSKDNKRSDRIYSLDIQPYPNYYSVKKLNRKYELFIKYLKEKGKIECNKFDTLEEKQKIINDSTLPSNN 80  
WD40-rpts                 (_____________________WD 1____________________)                      

Query       81 NYNNSSNNNNNNNKYETLKLDKELNQGNEDNIIKTVIGNNTEVSNNNLLDDTNNKLNEIKTNTSTEDHQEHNLVNKKNET 160 
WD40-rpts                                                                                      

Query      161 NSSSNDNISHNKTPMQSNKLLTSLQDDKTKKKPIKFNIATCGADEFVHLWRIFIKDDISIKCLGRFIGHSGEINCVRFNK 240 
WD40-rpts                                                                 (_________________WD 

Query      241 NGRYIASGGEDKFLYIWEKSKKPKNIPLGYDISFLDYKEWWNVVGSFRCSGVINSIIWSNNDTLYVANEDNNINIIDFVK 320 
WD40-rpts      2________________)                             (____________WD 3____________)   

Query      321 NTNCKVQVLEGHSGIIQGISFDNNYEYLASLSADQTLKIWKKKNDGKSWKLENSIKNIRRDELDKLNNACTTCTEYDFPD 400 
WD40-rpts        (_________________WD 4________________)                                       

Query      401 KNNTDKYESNTLKQENKKLINYDLLEQEAYKKKTKNKKEKADEDEEEANNNEDVEEQQTDVGEEHIEGHLNNNIVLNSNI 480 
WD40-rpts                                                                                      

Query      481 NKMNNSNNLKMNNSNTIKMNNSFNQENNVKPYQQIHTKFMSKKHLEDGEEEQEEEEEEKKFKRSLFSSEEMLPSFFRRID 560 
WD40-rpts                                                                                      

Query      561 FSPNGEFLITPSGIQFEQVEKVNEKNNKTDENAKPNYEIKAYSCFYIYHKNLFLKYNIPFFTIFSQTSHFLVAKFNYNTF 640 
WD40-rpts                                                                                      

Query      641 KLRTEQNILKRCYEHFLNNLSDVNDEDISNSNKKRKIYDDNLKLNELMYNEKLIKLNYEKTLLYNHIDIPDDVSQIVSST 720 
WD40-rpts                                                                                      

Query      721 ISESDVEFNEDKVSLKELSAENCLMKNTERNEDGNDEDNTEENVEEKKDDIKEEKQDDLKEEKKDDSKDDSKDDSKDDSK 800 
WD40-rpts                                                                                      

Query      801 DNSKDDSKGDSKDDSKGDSKDDSKDDSKDDSKDDSKDNSKDDSKDDSKGDSKNDSKDDSKNDSKDDTKEESKKENELDIN 880 
WD40-rpts                                                                                      

Query      881 NKLNADEEEGKNDIMDKYNDNNDNVEILNEQDASSELKDKKEERFIYTLGTFDGSVYFYDSEILDIPISIVKNIHLCPIT 960 
WD40-rpts                                                                  (___________________

Query      961 DISWNNLGNVCACSSSDGYVSFYHFNNNELGNIKSYKNYYLDKKCNDLTFDQNYFKNTFYDEVEFLNKDESNDYTSSEDE 1040
WD40-rpts      WD 5___________________)                                                        

Query     1041 FDDHNLIPPKEETKVKRINLIVGNAANFVLSQNTKK 1076
WD40-rpts                                          

5 WD40-repeats found in QUERY=EG_PFE0090w (Len=1076):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    12-58       3.68  266.63  0.01578        7.5%     30.07
  WD 2:  Seg  8   220-258      9.01  486.97  1.7e-05       30.0%     45.21
  WD 3:  Seg 12   288-317      4.12  284.65  0.00905       17.5%     43.78
  WD 4:  Seg 15   323-361      8.70  473.90  2.6e-05       30.0%     49.94
  WD 5:  Seg 24   941-984      4.61  305.13  0.00480       20.0%     32.57

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   12-58     HSK----DN----KRSDRIYSLDIQPYPNYYSVKKLNRKYELFIKYLKEKGKIEC
   WD 2  220-258    -IKCLGRFI----GHSGEINCVRFNKNGRYIASGGEDKF-----------LYIWE
   WD 3  288-317    -------------RCSGVINSIIWSNND-TLYVANEDNN-----------INIID
   WD 4  323-361    -NCKVQVLE----GHSGIIQGISFDNNYEYLASLSADQT-----------LKIWK
   WD 5  941-984    SEILDIPISIVKNIHLCPITDISWNNLGNVCACSSSDGY-----------VSFYH

   WD40 Template    TGECLRTLS----GHTSGVTSVSFSPDGKRLVSGSEDGT-----------IKVWD