Input parameters:

  Query = EG_PFD0455w (Len=482)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFD0455w, Len=482):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEIKILHRNPEEYKNNKGTSNYKHVRSFDKKIHLFQREVEYKRALNATKMDKIFAKPLIKCLDGHDDSIKSICVSNKNLS 80  
WD40-rpts               (___________________WD 1__________________)   (_________________WD 2___

Query       81 DLYSGSCNGIINMWNVLDKKLIKKIKAHDGFVRSLCMSYDEKFLFSCGDDKYIKQWVIYKNKNINDIINEEQDNIHQEQN 160 
WD40-rpts      ______________)   (_________________WD 3________________)   (__________________W

Query      161 DITQQSNNIYEQKNDNQFHYLEKEDVPKKIYVCKNVPNSIDKHFSENLIVSGSQTLDIWDYYRNNAISSFDYNNEYIYYV 240 
WD40-rpts      D 4__________________)(________________WD 5________________)   (________________

Query      241 KCNYSQTNLVGLTLSDNSIGIVDIRNKTPIKKLYLKYRSNSLSWNNMNPKQFVIANEDSNLYSFDMRYLKTAYLVHKGFV 320 
WD40-rpts      _WD 6_________________)   (_________________WD 7________________)    (__________

Query      321 NAVLDVDFSPIGNKFVACSYDKTVRLFNSDEPTSYDVYHTKRMQHVLCCKFSQDAKYVFTGSSDMSLRIWKTISHEPSGI 400 
WD40-rpts      _______WD 8________________)(___________________WD 9__________________)   (_____

Query      401 LSNKEKQAINYRNKLKEKFASLKEIKRIRQHHHVPALIKSLSDKKKVMLEAKKRKEKNKIQHSKNPEQLPIPEKKKIFVT 480 
WD40-rpts      ___________WD10________________)  (_____________________WD11____________________

Query      481 EQ 482 
WD40-rpts      _)

11 WD40-repeats found in QUERY=EG_PFD0455w (Len=482):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    10-52       4.85  315.04  0.00353       12.5%     29.11
  WD 2:  Seg  5    56-95       8.10  449.18  5.5e-05       30.0%     52.83
  WD 3:  Seg  9    99-137      9.10  490.74  1.5e-05       30.0%     56.41
  WD 4:  Seg 13   141-182      5.86  356.80  0.00097        2.5%     49.72
  WD 5:  Seg 17   183-220      6.64  389.00  0.00036       20.0%     43.84
  WD 6:  Seg 21   224-263      6.33  376.33  0.00053       10.0%     54.59
  WD 7:  Seg 25   267-305      5.77  352.98  0.00109       15.0%     50.17
  WD 8:  Seg 29   310-348      8.48  465.00  3.4e-05       27.5%     54.94
  WD 9:  Seg 33   349-391      7.74  434.45  8.7e-05       25.0%     54.38
  WD10:  Seg 37   395-432      5.72  351.01  0.00116       17.5%     40.83
  WD11:  Seg 40   435-482      5.02  321.97  0.00285       10.0%     21.31

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-52     -PE---EYKNNKGT---------SNY---KHVRSFDKKIHLFQ-RE-VEYKRALNATKMDK
   WD 2   56-95     -KP---LIKCLDGH---------DDS---IKSICVSNK----NLSD-LYSGSCNGIINMWN
   WD 3   99-137    -KK---LIKKIKAH---------DGF---VRSLCMSYD----E-KF-LFSCGDDKYIKQWV
   WD 4  141-182    -NK---NINDIINE---------EQDNIHQEQNDITQQ----S-NN-IYEQKNDNQFHYLE
   WD 5  183-220    KED---VPKKIYVC---------KNV---PNSIDKHFS----E-NL-IVSGSQ--TLDIWD
   WD 6  224-263    -NN---AISSFDYN---------NEY---IYYVKCNYS----Q-TNLVGLTLSDNSIGIVD
   WD 7  267-305    -KT---PIKKLYLK---------YRS---NSLSWNNMN----P-KQ-FVIANEDSNLYSFD
   WD 8  310-348    -KT---AYLVHKGF---------VNA---VLDVDFSPI----G-NK-FVACSYDKTVRLFN
   WD 9  349-391    SDEPTSYDVYHTKR---------MQH---VLCCKFSQD----A-KY-VFTGSSDMSLRIWK
   WD10  395-432    -HE---PSGILSNK---------EKQ---AINYRNKLK----E-K--FASLKEIKRIRQHH
   WD11  435-482    -PA---LIKSLSDKKKVMLEAKKRKE---KNKIQHSKN----P-EQ-LPIPEKKKIFVTEQ

   WD40 Template    TGE---CLRTLSGH---------TSG---VTSVSFSPD----G-KR-LVSGSEDGTIKVWD