Input parameters:

  Query = EG_PFC0965w (Len=2706)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFC0965w, Len=2706):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDPDKNNTKGINNKKQKINNFDENIVMLNEKNVMNNMDEKDENRYYIKKKIKEQDEKNNENNNYNNVMEYNMECDMLYNK 80  
WD40-rpts                                                                                      

Query       81 KEVQNIKNNISEKCGIEDYDDYRNNNYDEHYDFPNGSYSCSDNMYNNNYNLLNKEKQKTKNKDNNRLSDTYKVLINFCIN 160 
WD40-rpts                                                                                      

Query      161 EISRNKDQDGINEVYQALKNNNLLIGHNNNKNKNNICSINNTCSINNTCSINNTYSNNNICSINNTYSNNNVDINYYNYK 240 
WD40-rpts                                                                                      

Query      241 KETLDKDSKGNVFNNNNNNYYYNNLCDGDNNKNEVNYISNKYNSLYNNKDMMMVGMKRKKKLIYSDEECDKYKKKKMCIK 320 
WD40-rpts                                                                                      

Query      321 NDIECDMLHIFKNVINILTCKYPEHNIKEFFFNSHNKLKEEYENNKNKSIQLSSYYCNRYNNVYNKIKNKIFFSRNNLRK 400 
WD40-rpts                                                                                      

Query      401 KSHIHIRYKYDVFNYCLKNIKRNITILSHYLPHKKEYDYITKIRFDEYCDNIITSGKDGFIKIYHLITGNIIMCIRAHNY 480 
WD40-rpts                                                                         (____________

Query      481 PITDFDIHKSNRYMISCDEKGIVKFWFLDKYMYKLLFTYRRTFYMKNVKFFYNVTHKNVKSSQSYVNNKYGLFHNHYNSN 560 
WD40-rpts      __________WD 1_____________________)                                            

Query      561 YDNNYDNNYDNNFYNNYDNNCHNNYDNNYHNNYHNNCHNNYHNNCHNNYHNNCHNNYHNYYHNRYHYSCGGRNSCLYYKT 640 
WD40-rpts                                                                                      

Query      641 YALCSTNTYFFIIKFDDLNNDYQIIKSINTMPMDNVKFFPYLQFSYSLNYNISPYVYNKLIISKNPIKELKNSYLIFINT 720 
WD40-rpts                                                                                      

Query      721 QKDTNNKYNENNNDHNINGNGRKKKLKFLLLTTKKIYDDHDEHMSITPHDVEITKYVNKVSDEIYNNIHAEDVIELAYNK 800 
WD40-rpts                                                                                      

Query      801 GDQKKKKLNEQDNSYRKIFQFFEINILQNVKNNIGFVMFKTFEDFKEEIFLFLFSNTSANFITVQTNGSIYMWNFKKYLS 880 
WD40-rpts                                                                                      

Query      881 DLNKYKKKKKIKKNNNNINNINNINNNNNNPSYCNKYHYSDVKNEKKKKISICCFYTSLYVEYMMESSAMHEHAKTKNKN 960 
WD40-rpts                                                                                      

Query      961 ENVLNEINKENKNDLFIISSTSCSSYYYSSSDYDDGRSDNTLDDEGKGNGNYSDDSLRRMGRNMGNDFIRRNNNNNNNNM 1040
WD40-rpts                                                                                      

Query     1041 RMMNDDVNNTNNNICNKRDRVDYGLLDREEGNNKSEGCIIKNLEHISKLDKNKDKKGKISNYDKYNNNNNNIYNNKYCEN 1120
WD40-rpts                                                                                      

Query     1121 SFLKKTNICNKCSNEKKCIHTLNNEKTNNKTKLRAKKLHYKISNISLNISDEYLIVADGITNKSNSSKDINNAVTMRTNI 1200
WD40-rpts                                                                                      

Query     1201 SIFSTKTYEETKFFDLKKCDSYVSFIEPNPFYKDIILFGCFRKYIYLLNVEKKKIIKKFSYDSDLKNFSAEWNKNGYFFI 1280
WD40-rpts                                                                                      

Query     1281 VSHNFGYFSIFTLNKNSCYKFTLREQITSTQICFLNDLNANENMEDYDNVNVMSDVYVYDSVGGMNESNRVLPVGGVSTS 1360
WD40-rpts                                                                                      

Query     1361 NNNLMSMRGRRLTRSTRNNGNNNNNNNNNNNNRSSINNRSSNNNRSSNNNSSSNNNNSSNNNRSSNNNSSSNNRSGHRLT 1440
WD40-rpts                                                                                      

Query     1441 RGGNKIERTSNSDDELEIISRNNVNNSNDQDINNNNNNNNSNNNKEEQNNLSFKSSSKKKKKIIEESSDYASSEKTIYTL 1520
WD40-rpts                                                                                      

Query     1521 YTDSNSRCSKQNYKKNKNKKNNHNKDTVHGNNPLGDINTQTKKQTNKSININKNDDAQEDDLLNDEVKIIENGKNTFGKR 1600
WD40-rpts                                                                                      

Query     1601 TKQRFLNNNKQTVINLECMSNNNDEVINVEDVHRETQKSKNKIKTKKKNNNNNNNNNYDDDDEGVDVCEDKDEDEIINID 1680
WD40-rpts                                                                                      

Query     1681 HIINTSSSFNSKDNIYKKNKKISKNLKKRNSEPDCIHINDSSFMGNKDDAFVLDDDDEIKSNNNNNNDDNDDNYCQNERC 1760
WD40-rpts                                                                                      

Query     1761 DEPWGHPNKQSNFVKKSKIRRKCKKEVTEICDDKKEEQISSNDDSFFDNQSSISFLSDDSKYDNYTDWLNYTSDGSYTSY 1840
WD40-rpts                                                                                      

Query     1841 INKNWKIGKIEKIENMEKIENIEKIENMENIENMENIGKIENMENIGKIENIEKIGNIKNIEKIEQNNNKSCDSISNTSW 1920
WD40-rpts                                                                                      

Query     1921 SSDNDQDFLINSMLSSNDYIKNVKGYLFRKDNIKEDLCVKDNNMNNCLKDFGCYYKDSGSHNLKYINSSVLSQNNNYCNN 2000
WD40-rpts                                                                                      

Query     2001 KYIYANDYLNTCIMYQNFYRNNNSGCLIYTKKKKRRCASEENKPILNNFNNMNILVDKKFKIYEQELQPLLPRFSSFNSC 2080
WD40-rpts                                                                                      

Query     2081 ENYLDFLKNEKIDPIHIYISYYKYIYGKLRNRDKSYKNLLVYDILYKVLQNYRKSMSLYNTKIDNKNERNVNNIYCDKFM 2160
WD40-rpts                                                                                      

Query     2161 KSSSIKQIDYFNGPSPKDQGIIMLNNIILKDELKNDLGSLGEKGIVMCDESTNCDYKKEKEVDLKMDPLLEKLNKYIEFY 2240
WD40-rpts                                                                                      

Query     2241 KTGKAEKYKQNYLNLMKIYKIYNRFVNKTDDVLCSNNIIYNNKKKKKKNDYGNYNIYRNNKNDYDLLYASIFYRFLKRLP 2320
WD40-rpts                                                                                      

Query     2321 CKEEENIDNFIYYNRDMICKKNRNKYNNKEKKRKRLKDYLQAYLMHYERVHQKKEDWDYILFLYTSNNKMIYMNNYTKKK 2400
WD40-rpts                                                                                      

Query     2401 ILETLEEKYQKNLIREKFNMLHNYPLKGRNCIIKNVDQLIACQYLNPYSVYVRSPVDNYDYINIQSFDNSFLSNYSRYND 2480
WD40-rpts                                                                                      

Query     2481 FFTMFRNNVYNNINNNNNRNNNFNTSLNYEHIASSVRNTEIAVISEGSSMFTSDQSANYFSEDEEEDDDDYYDDDYYDDD 2560
WD40-rpts                                                                                      

Query     2561 YDDDDDDDEDYADDDFYNDEYTYTNPAYYYNRRYTRNRARRTSQRTRNNRRNNNNNNNNNRKSRKRSTRTNRKKNERTKK 2640
WD40-rpts                                                                                      

Query     2641 KNFENFLNVRKSDRLRNKEQNKKEENNNNNNNNNNNNNNNALFRNSLNSRNRYNTRSSNINRDHLI 2706
WD40-rpts                                                                        

1 WD40-repeats found in QUERY=EG_PFC0965w (Len=2706):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   468-516      5.78  353.59  0.00107       22.5%     35.81

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  468-516    TGNIIMCIRAHNYPITDFDIHKSNRYMISCDEKGIVKFWFLDKYMYKLL

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD---------