WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PFC0875w [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PFC0875w (Len=3133) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PFC0875w, Len=3133): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKIRKLYGLLKKIYYEKRKDFFLYFFFLLIPFLLISFHLFLRNISDKYSLEIYNTSSPNDKINLNDTIRQYVLFLSNELC 80
WD40-rpts
Query 81 SKEINDEIYVNHICLTPGNELMKDFLSYAENNDLNIFKLYNSEEDCLKNLKYAIELKSEDFKNVNSLELNDDILNIHEND 160
WD40-rpts
Query 161 KNSLLYNLHTNIINLKSSEFNINDLYKDVYTENEFENIKNLKINPHILKVVKNTEFYKNFIKDIKNLKNENHYTQYFNDD 240
WD40-rpts
Query 241 RKKLFFYNFVKNNLVETKYSCGLLSVENVNYYKKQKNVKFSYLFGLSPQSEGFKGKGLYKNAPLYNKYENKQYGNPFHLY 320
WD40-rpts
Query 321 YPYVTLESDKKINEKNERNEKNERNEKNERNEKNEKNGKNEKNKDILSSTNNNVVMKNGIQSYHNNNSINSNDDQKKKNN 400
WD40-rpts
Query 401 NNNNYYYYNNPDGLITNVKYKIRVGDYALLNSNEKYFFNDININLKQNFINFNTVDDLSFNIYFNEWYYFSFFIVLEYQF 480
WD40-rpts
Query 481 NSFILNYNADILKKNNLLTPRYDEINELNKEREITMEYKKTDEKEYQVNNEYINENVGYDEKGGKYKTELKLNDFFIYKM 560
WD40-rpts
Query 561 PMKSMKINAFDTFEKNIFRVVVFLCVCLFIVNICFDINKERKINIENFLCCLKINKYYYYYSWLLFYFIILFFYNIIFTL 640
WD40-rpts
Query 641 VVYFYVYKCLMNYFILFFLIYFFLMNSLLFTIICMQFSNNSSINYIATFLLFFLFSSFRLIIHSGASNILTFFVLLIPHS 720
WD40-rpts (________________
Query 721 SFCLSLDFIFILIKNNIKIDYKQLFIKFENISLMHLIICSIVSFVLLICILNYIIYYKRKKMNMLNTKYRGKSKSITNDK 800
WD40-rpts _____WD 1____________________)
Query 801 RKKSQQKTYEYGNINYDMSEKYPTHQLKDNSNDFMLEGSDEDDTCYELDTLHKKQVNSQMCLRIEKIRNDRRESNGHPYD 880
WD40-rpts
Query 881 IPMIPLRHNNNINNNINNNINNNINNNINNNINNNQHRNNQCYLIIQNVNKFYGKKHALKDVSLTLRSNRIFVLLGENGS 960
WD40-rpts
Query 961 GKSTLINIITKMISKDSGEINFFKNSYKNKKKDIYMDVNKNRRNGLCGRICSNGYIKEFVMNRIFKRNCNDTNNYDNNSN 1040
WD40-rpts
Query 1041 NNNNNDNHNDNHSNNSGINSSFNNNNNVHNKNIKNDLEISYCSQNVILYENLTFYETIKIFLLYYNKNVDKYLNKKRTLK 1120
WD40-rpts
Query 1121 IMNDLDLVQYLNDQIKNLMDEVKKKISIFICFLVKRDIYILDEPFIALDIKTKTKLFKFFDKIKKNNIIFICTHDIYEAN 1200
WD40-rpts
Query 1201 NFANDIAVIKSGQIIFKGSKNSFQKLIEYKFTLNIQFNGLPNEEQTNYLSQEKIMSALNKKGVIKSPRKVANNYVDGYNV 1280
WD40-rpts
Query 1281 GRISSHESSINDKKKDNNDNNNDDDNNKNNSVDHIDHLFDILVTNINEFTNNRDIIKKNIIKFIKGTRNENKNCFIFFNE 1360
WD40-rpts
Query 1361 NHIYCTYKINELESLKKLLCVLNKFKNILTYQLKTIDIYYTYIYIYTLNEKKKLLKNIQDKDIKYLIEIDPLFFLFFQNF 1440
WD40-rpts
Query 1441 KYFNELNNLLLMKNNHMQPISYNFAYLRDILVRGNENKNIINSTNHDDNPYDINMYNNHNKYGKYKNNNNNNSFYNMRDD 1520
WD40-rpts
Query 1521 TELTDIEENISSKKKKNKFIEKEFSYNTYRNNKNNDENDEYGEYDNYDDNMIMSNTSNIMKKKNIKKQNIFKTCINFFTT 1600
WD40-rpts
Query 1601 YIKPTLLLKLKKDLGSSSFYWYKFIVPLFLLSFGLLIIKCVSLFGKVQNIDLDYSTISSNHLKQSTINYFILYKNEMNNN 1680
WD40-rpts
Query 1681 ETLGYNKYNLNDDNIKKNLNNSYDKILKKLETKQDDNAEESHINNNDHNDNIKDILKLENNEYNYNKLIHENSFNYYNST 1760
WD40-rpts
Query 1761 INSLLQKYCLKEKINYIDEPLIEDNLYDSINNYLEKKANHENEISLGTFAFLITEKKADNSDNKEDVETLETRNDTDVNK 1840
WD40-rpts
Query 1841 EVEININLFYNYTSIHSYAYYTNSLFNMLSDFQNILNKKSGNKNIILDGSTYDNIKVVEDVKGNCDMNTLLYDKENKYNY 1920
WD40-rpts
Query 1921 LIKDIDNKNIREECNANFRLSKNVSYNNNEEEEDINGNINYNDSNNIYITPKKNNKEEENNFLVKKLKKRIDTLNEPFNI 2000
WD40-rpts
Query 2001 KFHEHFMRDFYINIYVFLSIVIFFCVFFERFKNEIENRKIFENFHVHQYIHYFQILLLEYLYYFIYILCLFIVLYIFDYK 2080
WD40-rpts
Query 2081 EFLFMSFFCFLLLYGFNIFLSICLFSSLYLHSYILFLFFNFIFCGIISIVIYVLVILSYAYNNEILINLSHVLVCIFRIF 2160
WD40-rpts
Query 2161 DSFALSHVLNIRSLCLNVKRHMKHIDEDIMYEDMSNSNNFVIFGCFKKVYNQLSGDNNLNISDGIQSVCEDSNSFFNTSG 2240
WD40-rpts
Query 2241 DFVFLLINCIIYLSIVFYKLLQIIPSKERTDKKNESEKTNYEEIILNNSYNVGVQRKKEQKKNRYTFFLKNFYLSNKEYK 2320
WD40-rpts
Query 2321 QPKENYEKNRNPFFYFIQKLFNLKRGNNVDENNTTMGIYKYGEKVDSNNYISEDEININNQLNSEGYLKNDIYMNELNDN 2400
WD40-rpts
Query 2401 YNNDFDDNTVDIEMQISEKSNIKEKMLYKETEIDKYYKGQSDDDNDEEKNFNKISQKYILKNLNIKMRPYKIYTFSSIFN 2480
WD40-rpts
Query 2481 NDLNILYFFKYFFCNNKDNLKGSLQTIAYGQNYEINNKFINKKNQNEHISEKIQKMNERDYKIELIPTMSIYEHFKIILT 2560
WD40-rpts
Query 2561 FKNIELTNVELKYIINLLMLIVNLKCDIHINCNQLSGGMKKKVELMINLLRDDKIIFLYKLNDNIDFCSQIYINIILKNI 2640
WD40-rpts
Query 2641 LLYNCEEDEHKDEYKDVYKDKYKDEYKDEYKDKYKDEYKDEYKDTYKDYEGYKYYEDRVYEQDIQLYKGEGIYTNDENQF 2720
WD40-rpts
Query 2721 DDYIDKYSLYDLRGKEDRKQLRENMLKGRHGKNNYKFDESNDISYTSNDVLKGDDDMLSLRRNTKESKRNKNKINKKKKK 2800
WD40-rpts
Query 2801 ENELILETYDIEKTNMNQLGSNLSNSNYLECNISSNMNSVNEPIIHSFIKENILKIKFGIENFVIYTHIYTDILYYDYLY 2880
WD40-rpts
Query 2881 LFNKNKITYKNYTTNIKNNFKKFYSFQIKLKGIRDSKIIDYVHMFFSINKHAFARFEKVIKKMDDKNSKKPKKKKKKLIS 2960
WD40-rpts
Query 2961 PKDMPSNSIILFLENNVKRNVLNVHNLYYIFKTMKKKKYNSKKKKGNLISLCKFHKILLNLMIDKYSYLHSYLSRNKYIS 3040
WD40-rpts
Query 3041 IFHLFKFAICEVAYQNIQKFIIKYKGIKKVYSEITSMNNYVFILKIYDNKHIFKILEMDKRLKFNDKDIEVEQIDINNVN 3120
WD40-rpts
Query 3121 ANDIFLLMFKKLL 3133
WD40-rpts
 1 WD40-repeats found in QUERY=EG_PFC0875w (Len=3133): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 20 704-750 2.92 235.45 0.04101 20.0% 19.71Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 704-750 SGASNILTFFVLLIPHSSFCLSLDFIFILIKNNIKIDYKQLFIKFEN WD40 Template TGECL-----RTLSGHTSGVTSVSFSPD--GKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |