Input parameters:

  Query = EG_PFC0585c (Len=1385)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFC0585c, Len=1385):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAARFQMNTKLLISILKKRKNGPLPFLQKCYIHNVPRINTMKHMNISDLRKNIEVCNKKNVKHKNVWSNFLYIIILKLFN 80  
WD40-rpts                                                                                      

Query       81 KEIKNYVDFMIILKLLSKYIKIEKKVLLYICEQIEHEIYKFRTRDLTLLILILRKNNFDNIYYINLISKSILMKMNKNMS 160 
WD40-rpts                                                                                      

Query      161 YKDLALIIYSLSKNIYLTDEQIYNKEIFNFSILKFENHLNNVNINLHSLSLFFYSYSVYFINNCFYYYYYFHSFFNIITK 240 
WD40-rpts                                                                                      

Query      241 FINIINKNLHLYNSTDLMFLYIGSLHIHNMYTPNHVDQNKEPKNNQKENNNYHNDNHNIYLKNINNNCYDHRLDSNDFIT 320 
WD40-rpts                                                                                      

Query      321 MTNYDQGEYNKHIQQNKHIQQNKHIQQNKHIQQNKHIQRIGTHCTESNSNNQQLIQIQNDEKENKLITYDNSKHNLLKDP 400 
WD40-rpts                                                                                      

Query      401 CQHNIVEKDGEKKQNLIKNLIINIKKIIEEKLSSFKIQEIVNILFVSLNKNIIINKKYFHFLNQEKINIRNYINIYVNIN 480 
WD40-rpts                                                                                      

Query      481 KIYLNDEEENTSHCILKIKNDNKKDILYHDHMKFLYNLMNEIIYRNDLLNMKQIILLLYGLKFNNFMFLQFEKIILKRFI 560 
WD40-rpts                                                                                      

Query      561 CLPKKEIQKIGKEEIMFLYQYFFVRTCLFNELKKQNNLFISQDEYENYIYISDKYNESAKLDNSYNMPSNLKEKNTNHHG 640 
WD40-rpts                                                                                      

Query      641 GKDNTLDLYIHDDLFYMNKNKKRDRYKIYLYDNFIFNYPAYYVEQKKDHIDYNESVNNFDNMKSFIQLKKKKINKINNNN 720 
WD40-rpts                                                                                      

Query      721 NNNNNNNNNIYIDTNIQTVNKNYSCTHNNVIKNETNDNYPNSTIRNQHPNDQVILNNPVFFYNKKLNVVDSIDFEYELTC 800 
WD40-rpts                                                                                      

Query      801 YNLYLDIYKIVCLKLLTLLKNHKLSCLQSIDILCIYEKLNIRDYRIIKYLYNLKKELLYLDNTYLLKVINIIVKFNLYNM 880 
WD40-rpts                                                                                      

Query      881 ISYLQINKILTFINYNNINESIQILKLIGMLISVHKHNKLSPFHMNNLNVQNAANYLFKNLYNLQNIQDLKKIEMMNVYD 960 
WD40-rpts                                                                                      

Query      961 NLTFKFYKLFKNILSINVKRYVQNCNSYNKYEMNTHTNNLNKNEQHKYIHHNNDHKDGRHNNNNNHYDKVDVSSSSSSSY 1040
WD40-rpts                                                                                      

Query     1041 YYYLNKSGKNLGNINVQNLDDININKIKSISYKIKKDQIKDIGYMRVSKYSELMKSMKMMNYDEHFNDEYRNVCDEIYED 1120
WD40-rpts                                                                                      

Query     1121 LFLIYNKNIQVYKNINICNYTFPMAINLLTLNNDENILININKSDDNKKLIKVDKKKFLIVDILYNYDYYYTLTKSKLDK 1200
WD40-rpts                                                                       (______________

Query     1201 LKEYNIYLSYYSNHIKKKNKKILNYKKYALLKLIKKRGFNYICIDADTYVKNKKGKSKDLSYEINKLYINNLILDILKRQ 1280
WD40-rpts      _________________WD 1______________________________)                            

Query     1281 KKNHLHPHPHTQNRTTKQIKNINIKNKLLLYHQNKKNVKKIIHFKNYKYKIMNLPDQRNHYHNKRIKYIKDKSLLAINHK 1360
WD40-rpts                                                                                      

Query     1361 TKNIIEKQKISTSNHLSKLKRMFSL 1385
WD40-rpts                               

1 WD40-repeats found in QUERY=EG_PFC0585c (Len=1385):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 40  1186-1252     3.03  239.74  0.03599       15.0%     32.73

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1186-1252   NYDYYYTLTKSKLDKLKEYNIYLSYYSNHIKKKNKKILNYKKYALLKLIKKRGFNYICIDADTYVKN

   WD40 Template    TGECLRTLSGH------TSGVTSVSFS----PDGKRLVS-----------------GSEDGTIKVWD