Input parameters:

  Query = EG_PFC0350c (Len=539)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFC0350c, Len=539):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSHLMSLPIVLLKEGTDTAQGRSQIIRNINACQIIVDIVKTTLGPRGMDKLIYTERDVTITNDGATVMNLLNISHPAASI 80  
WD40-rpts                                                            (_________________________

Query       81 LVDIAKSQDDEVGDGTTSVVVVAGELLNEAKGLLNDGIEPNMIIDGFRNACNVAINKLNELSLNFSNKNEEEKRSILLKC 160 
WD40-rpts      ______________________________________________WD 1______________________________

Query      161 AQTALNSKLVSNHKEFFGELVVNAVYKLGDNLDKSNIGIKKVTGGSCLDTQLIYGVAFKKTFSYAGFEQQPKKFINPKIL 240 
WD40-rpts      ________________________________________)                                       

Query      241 LLNVELELKAEKENAEVRIENPNEYNSIVQAEWDIIFKKLNLIKDCGANIVLSKLPIGDIATQFFADHDIFCAGRVEDAD 320 
WD40-rpts                                                                                      

Query      321 LKRTANATGALVQTSLFNLNDDVLGTCGVFEEVQIGNERYNIFKECLKTKSVTIILRGGAKQFIEEVERSINDAIMIVLR 400 
WD40-rpts                                                                                      

Query      401 CITNSEIVPGAGSIEMQLSKYLRIYSRSICNKEQIVLFSFAKALESIPRHLSHNAGYDSTDILNKLRKKHSEQTSDIWYG 480 
WD40-rpts                                                                                      

Query      481 VDCMEGDIINAYDNCIFEVTKIKRNVIYSATEAACLILSIDETIKNPSSAAGTQRSPYS 539 
WD40-rpts                                                                 

1 WD40-repeats found in QUERY=EG_PFC0350c (Len=539):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    55-201      3.85  273.90  0.01261       25.0%     19.89

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-201    ERDVTITNDGATVMNLLNISHPAASILVDIAKSQDDEVGDGTTSVVVVAGELLNEAKGLLNDGIEPNMIIDGFRNACNVAINKLNELSLNFSNKNEEEKRSILLKCAQTALNSKLVSNHKEFFGELVVNAVYKLGDNLDKSNIGIKK

   WD40 Template    TGECLRTLS----------GH------------------TS---------------------GVT----------------------SVSFSPDG-----------------KRLVSG-------------------SEDGTIKVWD