Accession: EG_PFC0345w - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = EG_PFC0345w (Len=1711)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFC0345w, Len=1711):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNNITIRKPLFEVPNENKSNVLKYEKDNDFNNKKNDPSNLESYISSTLPYKRIENNHHNYNNAKYDENNKNDDDHIPLDL 80  
WD40-rpts                                                                                      

Query       81 NNKENMNFFVNKKNIHNSNLNYNHDNILQSYRNGEINRNYNIMDNMYDVYYINKSKANLNDYLKHVNINHTAPCIGEFRT 160 
WD40-rpts                                                                                      

Query      161 CMNCFLNISTLFCKTCNIFLCAICNVKLHNNKSNHIINVASSGLYENNVKFNDIILKEKDKWLVELDNSIPIKIREKCSV 240 
WD40-rpts                                                                                      

Query      241 HTKEYIKYVCKTCKYTLLCADCLLNDPVHVQNKMENDMNIIKNDMNIMENDMNIMENDMNIIKNDMNIMEKDMNIIKNDM 320 
WD40-rpts                                                                                      

Query      321 NIIKNNMNIIKNEMNIIKNVPEQKRKNEHFLPEQVQENNDNKNGSKNDKNLKDSNKKKRENQYIVSIYKKEETSDSNNKD 400 
WD40-rpts                                                                                      

Query      401 IIKDVIYNNDIDKLKPGFKLIRGNHEILTLIDARNDIKEELNNKLEILCKKSLILKNTLPSLRNICKYGKITCKNNKRSI 480 
WD40-rpts                            (_________________________________________________________

Query      481 RSGFTVTNNILNDKKVKIHNDLKKLQDKSTNFLKKLDQERINYRNYLEKKKSELQHMIKLSNKNAGLALDYYVQKLESFK 560 
WD40-rpts      WD 1________________________________________________________)                   

Query      561 CLFFTKDNLIDIEKKLEVPHSKIKSEFLSFLIEEMKYDILNSKMNIQNRCQSITKEFEQLFNCNIEIPVYPVHFRDFLKK 640 
WD40-rpts                                                                                      

Query      641 RTFNNKQDVHLISNDKKKKQQYFHILPFTDFYMNIEISYQIKCKRKDSLHSKWEKRTVSVRSIYLCIHTHSRYIKRSNKY 720 
WD40-rpts                                                                                      

Query      721 QNDEFDENVSHKNDAVGSIAYEMEQNEINEQERRDGEMLGVDEMENRNKIENYEHIDNASSEISNKENCLIQKNMSNNLS 800 
WD40-rpts                                                                                      

Query      801 NDIESIICLSNVEIKMFNDPNITNITILEKRNYSYGIELTEYNDKKDLVGYWLLSQNNEKDMKELYHILCAIKKKNPKAA 880 
WD40-rpts                                                                                      

Query      881 RIPSFYPKINMNNSMFNYHENNISTIYKNFSANLIEPSYFINTSEHEKDERDGKYLEASINDYMSDDKKKKRYDSIESLR 960 
WD40-rpts                                                                                      

Query      961 GSDKIKNDQIYQGGHSSSLLYYYDNNNDDNNNNMYDSSSSSNHNYYILTNDKRLNMDNFINNNLEINNSQNKVIEKNLEY 1040
WD40-rpts                                                                                      

Query     1041 INNVKLTKTSNYEQSNNTNSKDEHNISSDKSKKEDTLNLSRKSSYEYNNKILQSTSNKSLNGAYENNLFSGKKKKNKGTV 1120
WD40-rpts                                                                                      

Query     1121 LKDIEHINDIQDKYPEDLNINCVNKYVIENEEKHLLPLELEYNLVSSDEKFGLNKIKNDNNIIYMKHQNYHNLYDDNQKK 1200
WD40-rpts                                                                                      

Query     1201 HILFDTNKNVSIQRNNNINSVIKTNHYEVEKNNKDQRNYDNFTCDKKKKIYYNIINSDKDIYHNNIIYTKNEKEGIGNIH 1280
WD40-rpts                                                                                      

Query     1281 LNRNDKDITNFELLKLDGVKEFLDTFKDSYIDCHNKKENILNMTNKNKEDHQIIDVADKIFNETNMITMDNNKIYDDKNV 1360
WD40-rpts                                                                                      

Query     1361 HEKKCTHNDVIHHNMDILSTSIKNNEENLFIDTYQKQNRIGDIYMNRINILQEDDDDDNHNNNHNNNNNNNKLILFEYTK 1440
WD40-rpts                                                                                      

Query     1441 NDQMLHNNKNNLEGTEEFSDFIEKKNKIKIKNKNESYHKIDESLLSNEKNNKVSLLLINNNKDSSSVDNNKNNNNKNNNN 1520
WD40-rpts                                                                                      

Query     1521 KNNNNENNNKNNKNNNNDSFSKDNNLINNDNNNNNNNNDSFSKDNNLINNDNNNNNNNNNKVIKKEIIDDKEKNDIHKRD 1600
WD40-rpts                                                                                      

Query     1601 NIYIKDVSVSPLINNHPNLNSMRKDRTIEPLKIINGKNKLIKDLKKIQEQVERKIRKYKIQMDQENKKPPPSKNKINMKS 1680
WD40-rpts                                                                                      

Query     1681 INLDIDDDQNVDSQGIVDYVLNQIGNKKMGQ 1711
WD40-rpts

1 WD40-repeats found in QUERY=EG_PFC0345w (Len=1711):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   423-541      2.82  231.03  0.04689       17.5%     14.49

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  423-541    GNHEILTLIDARNDIKEELNNKLEILCKKSLILKNTLPSLRNICKYGKITCKNNKRSIRSGFTVTNNILNDKKVKIHNDLKKLQDKSTNFLKKLDQERINYRNYLEKKKSELQHMIKLS

   WD40 Template    TGECLRTLSGH-----------------TSGVTSVSFS-------------PDGKRLVSGSEDGTI-------------------KV------------------------------WD