WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: EG_PFC0245c [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PFC0245c (Len=3933) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PFC0245c, Len=3933): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MIKKSEESKRLLRKKLNNDITNILLLFEKVQEWADLSNILQKLYLTIEKYELFVNVSSKFLLFRRLSQCLNPLLPSGVHS 80
WD40-rpts
Query 81 KALIIYSSIFKKVEMDFFINNIHILCSGIFEFMLHCTINLKTIYFKNIKSILRLKENVYIFAYALLLSLFNVVDSDNNIL 160
WD40-rpts
Query 161 LYIYSINNYIGENIFFNNIWLLLLRHPEIRTNILNFLEASFSPQIYLLSKERIKMLLPYKDHLVLSSIIYCLNDKNILNQ 240
WD40-rpts
Query 241 RITLSLLINNFPLSHVPNKKNKKKIIDKSKSNDYHMDKPPYSPFNASTSSVILNNSNMDSMNDNRINENNINNNDNKRHN 320
WD40-rpts
Query 321 IQINNDYLFGDMMNKQNDTTIMQSNKMLNRHNIIGEQHLDDDLLSSIHDDNSEKKNNNNFMLLNENNKISTSKEHLDNMH 400
WD40-rpts
Query 401 NRGIKSHEDIMGSNQNKMNLSNDEKDHWGGNLNSKVGNYDDKNICGKKHLGLKSEYGQVSYDESLERRLNNNNNNNNNNN 480
WD40-rpts
Query 481 NNNNNNGDNLKYQGSVDYDEHDISMSTENDKYGKMGNENMNDVFISKGKMMRKGYEDDGHHHININDDDNLNYDDNEDDE 560
WD40-rpts
Query 561 YGNYHNNNYNDRNYFNEYDEDDQYENNNNNNHSNNNNMLHLGSVDRNRRKQLKKKINNIGQTNNYDDDEEEEDEEEEDNN 640
WD40-rpts
Query 641 NNTSYNNNNNNSSSSSSIFFSDTSKKLIARNVIFLLKKSDIGLNRRIFKYLYLYESNDEKNFKDKEINFENYKIYCETII 720
WD40-rpts
Query 721 DILENKSDDNYNSIAEVIYILFKNKDYININRYIMEQVFLYLLNFCYKNREDTSIKSFLKNMLNLNLISYENILNIFLYT 800
WD40-rpts
Query 801 FYYLRRNDDLFVHYTNIYIKKYINLLNIMTFFVEFIKHMNKYLYIQFLFHFNLATLKLMNFLNLKIINIIKKYSHVKDLN 880
WD40-rpts
Query 881 EKYFIDSNDVVSGRHSTLYYFYFFVTHYNNYYLNKCLSIIVKDILPQNPSNRKMGNYQSHYYANNKHMLYMNTHEIHSAR 960
WD40-rpts
Query 961 MEEYSNKIQKVGFKNEIVDRKNKYDNNEYSESEIKMRAVDNSMNYIKRKVKKKNMESKDSSNSMSNMEINTNSTMANRLN 1040
WD40-rpts
Query 1041 HMQHIQHDGISSMEHMNNKINDNNNNNNVNYFFDGNNSNNNNNNNILENNNKLYFDKGYNGNYSKIENDQSFHNILMKYK 1120
WD40-rpts
Query 1121 FKLKQNLIDAIIKNHELYFFTNNCEYIIFLFYNYHLLIEKEKLNKSCFYFLKNILNNCTCENKNKFYFWCFLFLHIIRIN 1200
WD40-rpts
Query 1201 FNKSLLKNYKIKEAGDDTDDDDDDDDDDDDEEEDDDDEDDDDEDDEEEDDEEDLGVDGLKNMSSKKGKKKKKKSVHKNKL 1280
WD40-rpts
Query 1281 MNKKYGRGGSSKYYYYLTSDKEIMLHGGMMGGVNYSDMEHDEDNLDVDDEDEQMFSYNKNKIRNKHFGELNKMKYMNEDI 1360
WD40-rpts
Query 1361 TNNNNNINNNSNNNNNNKNNINNNNNNNNNNNNNNNNLNNLNNFNNNVSINNGNNKYRNYFRSTEEELLFNKRFVEFLLP 1440
WD40-rpts
Query 1441 YSNNIAKYIFQYIKILKKNKKFIKLFFDINYLYFFCDNMFCLKILKKSLKCKDNHELTINVKVILEYIINSKTNEYHIIH 1520
WD40-rpts
Query 1521 SNFYNLTHDVFKLYNRRNNLINYYLIKYIMRNKENLSYIFDNIIISMFDLITEIENLYEKIEMMKKDLSYSMMNNNDHVY 1600
WD40-rpts
Query 1601 DPNGMIEAADQRKSHYVSLKDNMNNMNNMNNVNNMNNVNNMNNVNNVNNVNNVNYHNNTINNNNNNNNFSNHTSYVNEKT 1680
WD40-rpts
Query 1681 QENNYHNLMNTYEKYLKKLKCKFDYISYFFLNMENFMLWLYKHKISKKIYHSRNKMTLTNYEKNMAIIICYICTEGNINS 1760
WD40-rpts
Query 1761 FFFRNYLDVFFILFLKIIYLNENISELNNSANNIIQKEKNNLKHNSLLEFKRDTLSMLNNIFNINHNKKFEYMKILNLYY 1840
WD40-rpts
Query 1841 RQIIHHLLFLYYYFTVKKYYVLQLQLVHFIRYILPLYEKNIDKKFLTNESTEKDKVFKRMKYNNYEEFISASKYHFEIIN 1920
WD40-rpts
Query 1921 RNNYNMKNDVFIFSILRKSMTIIFNLNEQVLYKEVLKTIIDLIENIIDEKEVKNYYLTVFFLDLLYIIKMEDQKKKKNIF 2000
WD40-rpts
Query 2001 FIMKFCQFLIEIFKLIYRDEMKNELKCDKKFQDDNITIDIIENALSNNKMSTASFCTIFSIKTDDKFVNVQHKNISNLFS 2080
WD40-rpts
Query 2081 VIFNLYAFLKKKIKLYYKHNKHLINNDDKNNVVNNNSYIYYDNNSNVYNNNNTNIYNNNNNNENNAFNNNMPNNSNIMNN 2160
WD40-rpts
Query 2161 MNNMNDIYHISQHTNNNIRYNDVSSCGARGHNINSNENVNQNDLNNNSNYNYNRGMNNMNGDINNINGDINNMNGDINNM 2240
WD40-rpts
Query 2241 NGDINNMNGDINNMNGDINNMNGGNFKNPNSYNNNNNMNSYYSHNSSDYHKDNDNMRNNVNSSNSNFHNNNQDVQIMNRK 2320
WD40-rpts
Query 2321 NDSDGNVGNFDNNSTYSYMNNVNNDISMRLTNINNNNNININNNNNNNNNLFAYNKNNPNALVNNMNNQDKPDQHNNSHQ 2400
WD40-rpts
Query 2401 YMYKENDMNQFGNSNYNNMDNTNNKFYNNYNYGKNVEGHTIYDNNNNNNNNSNNGAVNINSVQGENNVMSRNNILFNHNV 2480
WD40-rpts
Query 2481 NNNEYYFSQKNEDNMASMNNNHHNNYHNNNNNHHNNNINNHHNNNINNHHNMNRNNNIYSEDSKTNECYSMREKMGDVNV 2560
WD40-rpts
Query 2561 AYNSNFYDDKNNYTHMKNDLIKNEQKNNYGFCNNHENTFIYNCKNRMNRNNYAFNMGSKKNKKIMLLKVCLSNIISINKL 2640
WD40-rpts
Query 2641 LYFITRPEFLFIDNLYSIFKDYIKNRNEYNKERLSKSDYYYEQREKLYKEHRRKMNRQNIRTDSSNNNNNNNINSNNNNN 2720
WD40-rpts
Query 2721 NNNNNNNNNNNNNNNNIYNNNNYYYSSSINKVSFDDDEKIEVESFLDHNGVVGSNKKIKREKIREYFKKEKNLLKKLNFM 2800
WD40-rpts
Query 2801 TKFSKNTIKKSMIVMNNSDECIEKKKLSFSLTLLTEFDDVILIKIIDDLLNYYEKYKSKINLNEFMYFLFNIYLNICTLT 2880
WD40-rpts
Query 2881 KRIINHFIDFIFSFIKKITQTSQNIMSSLWFLYILFIIENNHIYVFNDKLQKKIIVEQISILIQISLYSYYSKNVKNNYN 2960
WD40-rpts
Query 2961 IQTPLPNFVQPFNIYYIIQNYFINNNYFHIKKNNKNIRYFYIKNLKLIEKNFNINDYSEIAAINALSFLLMCFYHTVNYN 3040
WD40-rpts
Query 3041 GTNKSYICESSVNIFYEHFSKYISLIYNNSLQNIFYRYVFLLIMNLLIDYNANSKYYIKKITFDLYSYITNVDIRCIKAL 3120
WD40-rpts (___________________________________________WD 1______________
Query 3121 STLFKKLNETNIDELLLVPTSSIFSLKFNIINSRINYINKLSLIILAGNRNFYLCHLPKIAENISEYIKFCNDLKLYREI 3200
WD40-rpts _____________________________)
Query 3201 LILICIIIIKNDENEIYIIIPTFISLILQIYHVERIKYKMAVENINNIDKDDDNYIYDFNSYNNKDVLSLLKTLLIIINI 3280
WD40-rpts
Query 3281 LIKRNVSFINFYSWIFFKDISIKKNRLEQQNREPGNLMIYPGHKTLVYNNKKKKQKNVVRYVSSSSDKDESSVYNISVDE 3360
WD40-rpts
Query 3361 ENSLKTQGRFFDDTYYKRKDNSGYTNKMKNFNSLTYEDKSSLMTGNQTSSTKDVGGMVNNAIRQNIEQNNMIHPNQINNN 3440
WD40-rpts
Query 3441 NNNNNNNNNVYNFNDFTNSMNQPNVINNNKKKKAFTTDDYFVKYDENQKVTKQTKLNHHNEDNLNDTITVYLNSNQEDYL 3520
WD40-rpts
Query 3521 YESKNNFTSIRSEHISSMVDIKKGSILNSNNILTNDNNTNNNIHSNIHNGSSSNNNNNNNSVCTGIKLDESKFVPFLDII 3600
WD40-rpts
Query 3601 ERIYSPNNILNKKYVSSEELKNEKSTRTYNSSLQEGSDYDEEEDEEYDVDADVDVDVDVDDDDDDDVDIVDVDVDDVVVD 3680
WD40-rpts
Query 3681 YNYYDNENNSVKIIDVDERKRSVHFYPQHLDGNTLKKNLYYNDNYLREYILSTKNELSGYSSFENNLSSSSVNSIKSNFS 3760
WD40-rpts
Query 3761 NTFSKDNINKNIITDDTSDDNDMMNSNNNMNSMMVPYNMHMTDDEFQENINNNNNNNNNNNDNMYLSSDDGYPSQSNHKW 3840
WD40-rpts
Query 3841 IHFNSLLNYDIHELSKKKKKKKKKISIHSCKNLPLVLVYLSKKIKLNFYKYSMKKPKEETIILLKELNSVENDINDLFLE 3920
WD40-rpts
Query 3921 VDLNEVYYDFLIR 3933
WD40-rpts
 1 WD40-repeats found in QUERY=EG_PFC0245c (Len=3933): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 56 3059-3150 2.77 229.28 0.04945 17.5% 18.22Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3059-3150 FSKYISLIYNNSLQNIFYRYVFLLIMNLLIDYNANSKYYIKKITFDLYSYITNVDIRCIKALSTLFKKLNETNIDELLLVPTSSIFSLKFNI WD40 Template TGECLRTLSGHTSG------------------------------------VTSVS----------------FSPDGKRLVSGSEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |