Input parameters:

  Query = EG_PFB0860c (Len=562)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFB0860c, Len=562):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKYKNYNTATILENFDKKLNKNYKVFNNEEIKKMDEEYEHKIKKKEQLKLQKKQIKKQEHKNEKKKKNKNLNKKHNQNNT 80  
WD40-rpts                                                                                      

Query       81 NNSDNSFHNSDNNINQNGNYTNNSDYNIINNNHDNINFIHGNKNKNHDNSFHNNDDVKNGEVKNLVTNEEREKQNVTFED 160 
WD40-rpts                                                                                      

Query      161 LNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQDLKVNKQSFYALVISPTRELCIQI 240 
WD40-rpts                                     (__________________________________________WD 1__

Query      241 SQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSI 320 
WD40-rpts      ________________________________________)                                       

Query      321 NKLLLILPPNRITFLFSATMTKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNIII 400 
WD40-rpts                                                                                      

Query      401 FTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILISTQVGARGLDLQDIKIVINFDICSCKEYIH 480 
WD40-rpts                                                                                      

Query      481 RVGRTARAGRSGKSITFVTQYDVENFLAIEKQLNKKIDKFTDLDENDVLLYHEQTIEALRLSEIEMKENQELYKKNKFKK 560 
WD40-rpts                                                                                      

Query      561 KK 562 
WD40-rpts        

1 WD40-repeats found in QUERY=EG_PFB0860c (Len=562):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   192-281      3.02  239.34  0.03643       20.0%     36.44

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  192-281    LKKDIIGLSETGSGKTACFIIPILQDLKVNKQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKPNVIVST

   WD40 Template    TGECLRTLSGHTS-------------------GVTSVSFSPD--------------------GKRLVSGSED-----------GTIKVWD