Input parameters:

  Query = EG_PFB0640c (Len=1471)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFB0640c, Len=1471):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALKSINISGNFEWCPFEEYKNYLLCFNSHNLLYSNNNSLNNYIYLLDINLNSEIRNLEIVNKYNFEDALKYDNDVIKGG 80  
WD40-rpts                                                                                      

Query       81 NKKNNKNNKNNHNNNSVNEYVTCFEWMNSNNFVDINNNEELSKGIIVGGLTNGDIVLLNAKNLFETNRNYDNFILSKTNI 160 
WD40-rpts                                                                (_____________________

Query      161 HDNGINCLEYNRHKNNLIATGGNDGQLFITDIENLYSPTSYDPYLDKNNLQKITCLNWNKKVSHILATSSNNGNTVIWDL 240 
WD40-rpts      ___WD 1_______________________)                                                 

Query      241 KIKKSAVSFRDPHSRTKTSSLSWLSNQPTQVLISYDDDKNPCLQLWDLRNSNYPIKEIIGHSKGINNICFSPIDTNLLLS 320 
WD40-rpts                                                     (___________________WD 2_________

Query      321 SGKDVTKCWYLDNNNFDIFNEINNSANNIYSKWSPYIPDLFASSTNMDTIQINSINNGNKMTSKYIPTFYKKEAGICIGF 400 
WD40-rpts      _________)                                                                      

Query      401 GGKICTFDNSTNNMSNVNNMNNVNNMNNINSFNNDNSCDGEYDSNKGKNKSTQKKFLIKYHIYPTDMELISEADNFEKYI 480 
WD40-rpts                                                                                      

Query      481 TSGNYKEFCESKINKCDDDHEKLTWQILQLLCTSQRGDIVKYLGHDINNIVDKIMQTIGKQPGFIFKTLIDEKENNNNNN 560 
WD40-rpts                                                                                      

Query      561 NNNSTNQMYQNDVLLHNDPNLMNNYLLKDNMNPNIMLNNNNNNINNRTGTNVMYSNGQNLLGDTNHNEENFNGNFDIDPE 640 
WD40-rpts                                                                                      

Query      641 KFFRELGEKTENEKIKQNEEDISGNDEHLLNSSIKGKENKTKNKKSGLGTDDNNDNGDHNKNEGSNINGEHVSEHILNEK 720 
WD40-rpts                                                                                      

Query      721 NNTNNWNLGIEAIIKECVLIGNIETAVELCLHKNRMADALLLSSFGGEQLWHKTKTIYIKKQNDNFLKNINYVLDDKLEN 800 
WD40-rpts                                                                                      

Query      801 LINNVDLNSWEEALSILCTYAINNPNFNSLCEMLAKRLQNEKFDIRAASICYLCACNFSETVEIWNNMPSKKTSLLNVLQ 880 
WD40-rpts                                                                                      

Query      881 DIVEKMTILKMIIKYENFNSIMNQKISQYAELLANSGRLKAAMTFLCLIQHDQSIESLILRDRIYNSANHVLCQQIKPPI 960 
WD40-rpts                                                                                      

Query      961 SPFQIVDIKPSPNVYQNNMYNNNNNNNNININSSSNNNNNNNNNKVLSSMHHPMQQFNQCNVNKMYTSTSNIINNNTMNS 1040
WD40-rpts                                                                                      

Query     1041 NFKSVIPPPLPMNTQMNNSTSSIQPPPSVPPTKFHTQIINNTMNSRSSIATTTKNYPTSNLNSVIPTSMNNMNTNISHGN 1120
WD40-rpts                                                                                      

Query     1121 NVTPPYMSQTNVAVPNMNNNNNNNNTMNPTYPSLPKFPNYNLNSQVQQNSIIPEKQLTSPMFSSNSYGNINKTHTTNNAV 1200
WD40-rpts                                                                                      

Query     1201 PPPPNVTSSVVTPPMPSNQLNNTRSSFADIQNVVSPPRNKNQSISSTANLNYQHDNQFNKRECMEQPVYPMTNQSSMFSM 1280
WD40-rpts                                                                                      

Query     1281 NNTMQKKNVPGGFQDNTSQMNYGMQPTGSPPPSSLSTTSPIAGALTVTPGMPVPWPIPTTTQQLGSTTQSTANENKKIQT 1360
WD40-rpts                                                                                      

Query     1361 ATKEQNGVLMNRNHIENIKKTISNLLNIYTSQESVKKKADDVSSKVYELFEKLDCGAFNEQINDSLLNLVNCINANDFKT 1440
WD40-rpts                                                                                      

Query     1441 TNKIIVDLSRNLWDGSNKAWIMGVKHIIPKC 1471
WD40-rpts                                     

2 WD40-repeats found in QUERY=EG_PFB0640c (Len=1471):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   139-191      4.19  287.85  0.00819       17.5%     38.33
  WD 2:  Seg 17   288-330      4.23  289.48  0.00779       25.0%     31.72

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  139-191    NAKNLFETNRNYDNFI---LSKTNIHDNGINCLEYNRHKNNLIATGGNDGQLFITD
   WD 2  288-330    LRN------------SNYPIKEIIGHSKGINNICFSP-IDTNLLLSSGKDVTKCWY

   WD40 Template    TGE------------C---LRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD