WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PFB0560w [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PFB0560w (Len=3990) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PFB0560w, Len=3990): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEYLESEKSSSDDRREVNNFENDYSKDSSHSNINSDLDVDRKKHSDNVYEESEQDGKQTEGRKKIKGFFKLKKGDSEDEN 80
WD40-rpts
Query 81 KEKETKDHRLKDGGDTFEENINVLKKKKKKKNSDTINYNKKYFNKNKHNGSSSNEHSSYSDENFFEAAKRNKILNEEIYK 160
WD40-rpts
Query 161 NKDNEDMMCDMSIFNDDNNMDDSLFNKNEDNNRYDEEEMKKYKRKGKRYSSDSYKDDSPQYMSERYSSEKYSSEKYSSEK 240
WD40-rpts
Query 241 YSSEKYSSSNRNQSTNLLNNIKNFCNTYIINKKKDRSRDTYEDEESREGAYGENTTEDLNEDTQEGHKNKKKEILMNILY 320
WD40-rpts
Query 321 NDINIKKNDEKDFFMDRNFKGKKKEIDIKKNQQVMKNMLNIKNNENIDVYNDKDNFINIDDKCPSGYFKDKIKEYDYLDN 400
WD40-rpts
Query 401 EKQKNVNKMIHPKDGNNNNNNNILLSQNSSTILSHVVQEDYADGIKKFNKNSFYNNLENRKLININNIYDKYKIILSEIK 480
WD40-rpts
Query 481 SGDHLNNVEKKLNVIENSLLCIFDLQDGDNNNNINDDDDNDDDGHHDDGHHDHVGNNMKGDKLDIKKRFSELFDDALNTL 560
WD40-rpts
Query 561 IENYEDVKKKEHSENINKKAQLNLSCDFNLYLRICKVVLNDEKHIHTSNKKNMLYYNNIYKINYIKSNNKNKDILYNIHC 640
WD40-rpts
Query 641 RNIHLYLILSSHEGIERKKQQMHILKDKDKDKNKNKDKNKNKENILNENIRKIQKQNKKQNQNFIDIDNIYYTNKLRNIN 720
WD40-rpts
Query 721 NVNDMNDMYHIHNDENDVINQKLYYDEIDYTKKGILDKIHVLWFYEKKNEVHYLHLYNLNNINSKMLSIIIDGYLECIDV 800
WD40-rpts
Query 801 VYLNNFFPLESFYNSVKNYYLMLITENSFYFFNIHLYFNCEEDYNISENEKLIYQNIYPFYFNIYLFLLFKVPKDSKMKF 880
WD40-rpts
Query 881 EYIRSHEKSERIFLVVNDGNVYEFIYEKKNLFEPFNIFKNIIVNSISSLINVVNEKIFHHSRNYMIEHTANDDNSSFNYY 960
WD40-rpts
Query 961 DNGKSSINSYNISNTYPEYMDNKSFIDEYNKNIYCDDLHDYPIKFYLKKIISTYFIKYFAFFKNKVKKIIIDNERSILYV 1040
WD40-rpts
Query 1041 LYENSDLYVKLLSNRADVNNKKKNYLSDTIIFTKGELIKELNNIYFIDDMNILYNDMYNMNNINNMVNMNNINNMVNMNN 1120
WD40-rpts
Query 1121 MNNMNNMVNMHNMVNMHNMVNMHNMHNMHNMHNIPNMHNMNSNTNNKFGFAHNNIDPTTFHKLNIIDIHINHIHERNNIF 1200
WD40-rpts
Query 1201 LKMVDNNFNIYYLSLVKNMDTNNYKLILKDFQNYPHKKGLKINDKNSDVIFTHHLKNLYIILKKKNLKKKEPNKAVVHKD 1280
WD40-rpts
Query 1281 DAQAKKKTFFFFNKDKMDSQKIRKTHAHKRRSTILRRDTSRRVDKNTQGKATYKMMSKQKRGKIRKRGEEVGEEEEEEDE 1360
WD40-rpts
Query 1361 EEEDEEDEYEEEDEYEQEDEYDEEDEYDEEDEYDEEEEEEEGRRRKKSYRIKKHSSNKNLNDDEEKNTYQEEDQDSYDDI 1440
WD40-rpts
Query 1441 SDNANDYNNNYNNNYNNNYNNNYNNNYDNNYDNFNFEQDNESEEEKVCYKLKLLTCADDIGNTNQMSSSNKNKFIFKQIN 1520
WD40-rpts
Query 1521 EYYINEEIIGVIYKKKNYYFHEFFEHTENDNILKDFYVNKMKQDNISNIMARNEKNRFHLNSQVRSEPNLRTTLGNNLTN 1600
WD40-rpts
Query 1601 TNMMPNNMSTMSIPNMNVNHMNVNHMNVNNMNINNMNINNMNVPNRNMPNRNIPNMMHVDSQNNLYNSGYNSKPSGNLYD 1680
WD40-rpts
Query 1681 ERNFMNMGEVRDKMESIPPFYLYENTVSEYQEYYDLMIITKKHIYYISKNTRTQKIEKMINNYLPYKISYENRNIESVVL 1760
WD40-rpts
Query 1761 KEIKIKEYGKKNQEDFYKSIKQNMLMKINNDKNNIISKQLINSVSGGIPIDIPPSPTSLIKEKNEYEEIYEYFINQIIEI 1840
WD40-rpts
Query 1841 SSTEEFLFIIWSILLNHVYKYEIMCFSNIQSSNQRDIKNKLNDDKSKRNMDAIHNMDNTNYYNSYGIPRMSMNIAGSSTG 1920
WD40-rpts
Query 1921 QDRKKLFLQNFKKNDMNNNNNNNNNDDDELLSQNEDEQNMFENSYIKKDWNNYNNNNNNVDYDVLNKIYKRTPFKFGFVD 2000
WD40-rpts
Query 2001 KSADYIIKQGKLQKAMELEIKTRKVKGINHLFNDNIIDDLENELTKSGGNNKNGDYKNKNDNVLDNENILLNDAAYSNLY 2080
WD40-rpts
Query 2081 NAYQKNSSKQKLLEAERNKSGTFAFEYLTNKNFDIVFLKNLKCYNNSLHMLSRGLLLLLSRLLKPVMFINLFSYEKYRDV 2160
WD40-rpts
Query 2161 NVFKCSSNVPYKSRKYMKVSEASRGVGISIISKEKIEEDEEESFYNMKDFCIIRMSDYMYSRRKRKRNILEDDSNMLILT 2240
WD40-rpts
Query 2241 GNLPLDFCLNLVEKLKCLSLCVSIVLRSLIKKKNEYTTKIKNIKDVSIINLYYDYTLIMINEINEFYSILNFINFSIEYM 2320
WD40-rpts
Query 2321 LIYCIIICDYYKNKSIIKKKNIGNKKNFIYLSSTLFDLLIKCNFMRTYLSSTYRNILKQCLFNIIRSGKYIPIEFFQGYI 2400
WD40-rpts
Query 2401 IHKNEFLALFLTKRIEEEVFLKKKMKVKEYYDYNNNKSKTDNNLLTHHHKYGDFMASSEKRAEHFINENLKNAMISINIY 2480
WD40-rpts
Query 2481 KLIILLYKADYYRCTSTLICLFIDSFYKTLGGDKHKNLILKDEVITDTKQGKHDMNDYNMNKKNNMDINITINNNNNNNN 2560
WD40-rpts
Query 2561 NKIYNDNTLNVYNNSYNIHSNHLMNDKRKNAQVLEKHLKMLCDNFFNLEEFYSSNIIINNMDIEYTYDYFILYEKCFLPI 2640
WD40-rpts
Query 2641 ERIVHVNYMKYLYKNNERKKNKIRKFLITLLEYSRDINFHFFIFNLILYKCKNEFPCSIFELHISQYLYFFVKLNELNIK 2720
WD40-rpts
Query 2721 DAYIYYFNNFKYQDMIIYFSRKAFYPWETNVEQQKKQTLSYIYNDKIKKNKKNNSYYEMNNNTYMNEHGYTDIENERLNK 2800
WD40-rpts
Query 2801 KNKRLNVRGRTNTLDDIIVSDHGNSYDKYNTSKHNRRKNHINEMKKKQNNKKKNTLFVDGKDMEGIGKEKEKENKNMNNN 2880
WD40-rpts
Query 2881 IFYNNSYSNINNSSYSNINNDIYSVDNMTSVNNTKYVSGVPSYAHVLINKQVNEYYQGLPNYNNMMIKGSHIINELPKNN 2960
WD40-rpts
Query 2961 YIYENNYIGQNYLMTNPLYNKETKDIFYTIYKYLFKIISYPSLKKRMEFIDNCMKTKIFVIRKVCNFKNRPFSSNKKNNK 3040
WD40-rpts
Query 3041 MNRDSSYVDNISSYYDDDNNNNNNNINILKKKKKKREVGLGGIRLRNGVDNKRTHDDTIDEKYKNNRNYLFMNGVDVLYN 3120
WD40-rpts
Query 3121 KDQLGYYKNSLDDNNNNNNNYNNDNIRRSHVSSCSYRRAHNNIKYDIKEGGSDNIYTSNIKRNKKKIKNIEEIFNINSML 3200
WD40-rpts
Query 3201 NKEALKNYYTVDKTILYDESFSKLLKGIFEKNKCLFKLKENYWSKQNSYYLHLKDIKKCRTCLNYQRLLFHEVINLFVFY 3280
WD40-rpts (________________________________________________
Query 3281 VYKFCNWDVLKNYFDILINGSEEAIIKVLEHFRNINKEQIDVIRKSYNNMYEYLSKSKYEHIDDIINDYNNKINNMERKI 3360
WD40-rpts ____________WD 1____________________________________________________________)
Query 3361 NINRIIDIIDIFKEYLLLIQQEIHTKEGLKNHIYGKSKILFKNFLPSFNLLKLIILCDKKKEKIENLNTNCFSTVNNMLR 3440
WD40-rpts
Query 3441 NDMIKGSTFYFSKYSYCFERLLDYAFSLTITFENINFIINYIGDVLKLYEVDFKNSLYLLVIIKLHKFINNLFEITKVRE 3520
WD40-rpts
Query 3521 ILKTKVSILKNNKYYERIKLLYLLNCIPLIYLDPHMNVILINESYEYKMNDDDKIIFSKLSPFSLVSKVVNHKLRSVYTY 3600
WD40-rpts
Query 3601 HDYTDNLENEEPIHKNKTSKSMNDDTKSVSHYEETKKKNDDDDMSYDSSSDYPKDISYDTSDGSYRDNNNNGSGPNDVKQ 3680
WD40-rpts
Query 3681 MKEKGIPKVSKENAKNKKKNVNVNININNKNDESYNIHNKIKKDNIIAIDKDDRKTLYYLYNVNYCFNDQNNNNNNNNNN 3760
WD40-rpts
Query 3761 MNNSNIFGNPHNPELVVLSYKNYCFYIVWISNLLLNHKIEYESLIYVYLKIYNNTKHQKASLLEEHEITIILYYLFTMWI 3840
WD40-rpts
Query 3841 NGDKNNSSFFFYNEEKSYHEKNNLGYFLKDTYGNLQYINNYSLITLLKELLSRAEFYFEYTSDAASRNYDISCIILDSSI 3920
WD40-rpts
Query 3921 YDNEKVKKSSVDILKKFFDNIYITFNDVLIKIPFLNQILEFQKIHEFLKRFKIYLDEIICRITLTEGNYI 3990
WD40-rpts
 1 WD40-repeats found in QUERY=EG_PFB0560w (Len=3990): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 76 3232-3357 3.10 242.76 0.03282 22.5% 14.60Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3232-3357 NKCLFKLKENYWSKQNSYYLHLKDIKKCRTCLNYQRLLFHEVINLFVFYVYKFCNWDVLKNYFDILINGSEEAIIKVLEHFRNINKEQIDVIRKSYNNMYEYLSKSKYEHIDDIINDYNNKINNME WD40 Template GECLRTLS-----GHTSGVTSVSF------SPD---------------------G----KR----LVSGS------------EDGT-----------------------------------IKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |