Input parameters:

  Query = EG_PFB0510w (Len=1245)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PFB0510w, Len=1245):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNERVLNVAMKYKSSCLLYKKNFNFKLFSYLKVCYHNDLWLHKKNQNGDSDSRNISLVSAQINNENKNNNISDDKDLKSD 80  
WD40-rpts                                                                                      

Query       81 GVKKCIGQKNKLYFDEKILLKFGNMGTYKKWQCSFFSTSEEKKYKIEKYMKLDEKKKDNNISCNDLDNTQMKIKNQVVGN 160 
WD40-rpts                                                                                      

Query      161 DFNGCNLEERKDNNEYDNDKYKKDSFEQDEENEKMRKKKEIKKILNIIFCSSIPMIGFGFMDQFIMIRLGDIFDASIGVT 240 
WD40-rpts                                                                                      

Query      241 FGISTLCAASFGQLCSDTFGIFFGYVLNYLLQTYKIIQPIKYDIKNKVYQYCTLIGSVLGILFGCALGMLQLIFIDTTKS 320 
WD40-rpts                                                                                      

Query      321 ERLKKKKELDFIFQMVMCDCSNVLNCEASTLFLYDKAKNELWSKAIHGRKNIIKISADSDEKSFNLWVLRNKEIINCKDV 400 
WD40-rpts                                                                                      

Query      401 ANHELFNPSHDEKFNFKTKTILAAPILDKNDEVVGVLMFLNKLRSHGGYFTRDDEKLAEMMCKHISIFMEKFHYISEGDK 480 
WD40-rpts                                                                                      

Query      481 KMIIFDKEKNNVKEEDDEDDDYDNDNDDDEEGTELKEKEKVKEEKYEDIKKKKKRQKRNILPYNILKMEKDDDKIFDEGD 560 
WD40-rpts                                                                                      

Query      561 ENRESKELNEDEDEEEDEEEDEEEDEEVVYEENIKENKDDIDYDDDKYDKNYEHDEKKENIFYKQNGDDHDENNYELIQD 640 
WD40-rpts                                                                                      

Query      641 YYYVEKNNIYNKNDTIQYEQNNNIYKTKFSNNIYTPKFDNYMDYKGNIKEHTANNIKHQLLLFNIDKTMKDEILTSDKIN 720 
WD40-rpts                                                                                      

Query      721 KDKSSDDIINSNKTYNEKNKLYTSTTGIHKNNMGDKLQDDTFYFKLLNKNKYYMNNVNGNLDIYYILYNIESVEQLFKKI 800 
WD40-rpts                                                                                      

Query      801 KENNFLLFNMKNCIRMFILFRDLYVKEENGYNIIKSQNNTTTITTTTNSNDSNDSSDNNNNNNNNNNNNNNYNNNNSVIF 880 
WD40-rpts                                                                                      

Query      881 STNEKIYDMLNRDNIYKKVKKEIFEGDSIIKTMENKPNLTNKNYMNNDNIDNNNNNNNNNNIDNNNNNNGDNIYNDDLKK 960 
WD40-rpts                                                                                      

Query      961 YYLNTSIFNKDLYVKHFVDIIMNKSLEEIIKMNVYISERINSLLFHKGNMLNDVTKLYMSNAYGEKCFFFNFPQIKEIIF 1040
WD40-rpts                                                                                      

Query     1041 VNEYEKKMDMKYFKMLKKIYKYNLNKIFSNNYKFFIIKKKKKLKKLCYIMKSFHPHILDEFWFNLSCQNEIKNIYYKNLH 1120
WD40-rpts                                                                                 (____

Query     1121 FVISLHNSSIIDFKIINHFILNKIFENISINCTTSSMYYNIKTIDFISYRNLYLLKNYTMHDLIYKYIIYYYCRKKLKRK 1200
WD40-rpts      __________________WD 1______________________)                                   

Query     1201 NFHYFNYQDLYIAENYFGLNTHTKKVPNMLDQNIGKKSAIVTVER 1245
WD40-rpts                                                   

1 WD40-repeats found in QUERY=EG_PFB0510w (Len=1245):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 32  1116-1165     3.02  239.29  0.03649       17.5%     31.10

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1116-1165   YKNLHFVISLHNSSIIDFKIINHFILNKIFENISINCTTSSMYYNIKTID

   WD40 Template    TGECLRTLSGHTSGVTSVSF----------SPDGKRLVSGSEDGTIKVWD