WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: EG_PF14_0710 [Plasmodium falciparum] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = EG_PF14_0710 (Len=4765) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (EG_PF14_0710, Len=4765): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNDENINNLIQKIGHNINDIRDRSMIMLIQKYEKNIIKDIDLKKRNYFFYMILHYINDRNAFISLKNLRDILLFLRCIIK 80
WD40-rpts
Query 81 DEDIKKKFEHLDINKFINEFLVHFKNNEEKYKSNNYIQSRKNIPNDNMVSSKDDKDIEKSSHQYSIEDSHKEYTQVVHIL 160
WD40-rpts
Query 161 NELNNIYNNLTNTGNTIDGDQQLERNKEDQNDSIHLANMTNNPNNILLAYDTRDVIQQDYQTHNAIIYNNKQDIEEYTSK 240
WD40-rpts
Query 241 DKMSKSSTSNIDSYDTTHRGNDQNNNIEKKMNNISNGSDYTNSSRTFKINPMDEKDIENINQIMKKNNYINIFTKNNYLC 320
WD40-rpts
Query 321 PDDFEYYNTLYILKNQIYQYSIHLLFNYKKYKTNKIKADNSLLYTMKQETEQNIYEDMERINNRYIFSYLYNFFDTFEMF 400
WD40-rpts
Query 401 KKNFLDINNIRNDDNNILLDNTVDKYKRNDKLTNNNNSIIKETSNNSVDVSCTGMEKNKNNNNNNNNNNNNSNNNKNNNS 480
WD40-rpts
Query 481 NNNNHIHSKNIFSYPTTEEKYKNINIYLYNKNINTYLYNKNINTYLYNKNIYYKINNFTHKINILCYHTQMKYNYMEFLG 560
WD40-rpts (______________________________WD
Query 561 MNIIKKKISVDDFIYMHKEIHKILNEYIYIFNKDLFLFNYKFLYTLSYNIHYIYKNYIENKNNITNDFYHIHNILNNLSY 640
WD40-rpts 1_____________________________)
Query 641 IIYIIVYSIYININKGCLCNSICNIYLNNFFFLLLQNLFYLLLLFNNNNNNNNYNYNNIIKSDEHNYFNFISSNQDENQN 720
WD40-rpts
Query 721 DISKFFKTKEKQNIILLNNINNFYFNKLKKKVKGKDYHDANMIIYPNDIYQYLFVTKNSCIYFFKFIIFYILEILKNSYF 800
WD40-rpts
Query 801 KIHLLRKDCSTLNFPLDNFIIIYDFLYNILIHYFNDNKKIIDQHFQVFLNYIQEIHMYDKINIQNENHNNDIVYNNNNNI 880
WD40-rpts
Query 881 NRINKKNHNFKEILKKDYHIKNYPSDEYYSNVHKPSLHIHNLSYHSSDVSKNSGSSNDSYSYTDSGKEMNRFSTINFFSD 960
WD40-rpts
Query 961 KSNIYKYTYKYSKKQIEILKILCIFINYTPVSFILMKKINIKIVHLLKSFLFDITLNIYNNELLYFLKIFFFFYDNEVYN 1040
WD40-rpts
Query 1041 KYNDLLSYYYVLVNMFFIDMGNDSMDYDKTYDTTNYYNESNKNDSNYINNNIDEGEKINYHIQNYNMDTFNTHNNSNNNS 1120
WD40-rpts
Query 1121 ESDIFTFLNIYNNIFHFFFFLPTNYFTLNNFVDKYFSTLDEEGNIEQMSNTPMFTNHDEKCVKNKIDDINGINCVDHTNL 1200
WD40-rpts
Query 1201 TNHINKSHIINNSNSIYNFNSSLYPFYRFNNDNNKNAKEMYCQPFHVILYKKLRQNIKCPDKNKDLKSDDIISDDIISDD 1280
WD40-rpts
Query 1281 IISDDIISDNKKNDDIKNAISTRKDFAKFSKKFIQNIINVLIDNKLKVLFNSFLLLSSEYNSFTNYINIDNNKISNNYQY 1360
WD40-rpts
Query 1361 IVYALKDINKMNILRINNHFQYINYNNITDTKYIKLFKNFILLLHNIISIIYSYNNELIYFFFNFVFDINNEQTKLLSNG 1440
WD40-rpts
Query 1441 GKDDNNEQPLNYIKNHDIFYDEQNDTCYKNVYPFDHSTNKNISIKNDYNDKNDDDDDDDNNDHNNNDHNNNNNNTGYCST 1520
WD40-rpts
Query 1521 SNKYHKQNDKKIYNILNYQLNEGNKCTHMENIKEIPSISKDINNYIKMDQKYDNDQNTTNNLYDIENKLSYNMQESSSSN 1600
WD40-rpts
Query 1601 IFLTSYQINEFIDIIYEICIYSKKKDIRDYYIGYIIENVRNKLSNLLNNIKNINIINEQINILSHIKMFSRIMLFLFFVK 1680
WD40-rpts
Query 1681 KKYIILYEQCLYNNLHFLYEHHFYPSFFNQEKGEHISINQDIIKQKIFFYEHIFLNIHNVYFYLFQKKKKKRTFSLKIFW 1760
WD40-rpts
Query 1761 RAYHNFKMKFNKEQFINEEENMSKEVEERNNYDINYTSKDGINIFHNNNNNNNNVRNDNDIGVTKKKDKRQNYTNIFKYS 1840
WD40-rpts
Query 1841 SDWNYNTNVLNIYITDFLNKECIYDEKILMDILSKVCIHSKNEDGSLQLFNYIIIYILRNCTTFHIYHDEEKKKNYENFL 1920
WD40-rpts
Query 1921 LLIYNKVLHLYFKLLKEILLKEQTNIYNIEIFIYLLKIIILLLITNNRSSNICKKIYHHKYFFLSHIYCFFFYDNEIIKI 2000
WD40-rpts
Query 2001 LSFSLSFYLICDEKILLLYKYRIFLEPYLFISHKNNSNIYKHTNIEQDKKVYMNKQADSHMINIHKLSVVNENSQHFKNS 2080
WD40-rpts
Query 2081 IIEEINVNDLSAYKPYSSHKIEEHIIHTNNKYNEDNKNYKENKYLHDDTYNYKNVNSQMNIIHNLYNMQYVKKHDVTFFN 2160
WD40-rpts
Query 2161 LNVYGTYRKKKKKKNKKDFEGIVNNDIHTNLNNSTHTSFYNIENKIVFFVPLWLYKKLQGNNFLFMIKKLKSFFFFTTKF 2240
WD40-rpts
Query 2241 SYLHMFHDTTQNKKEKELTFFNGIYDNNNLFISFYLFINKYFYLLLQNINNDSNSKSHYMLYNNKTHPFQTNNYNTYKST 2320
WD40-rpts
Query 2321 YHNINYEEKICTNKHSYMFINIKCYSNIKEKQTEHKSNNISNILVQIKEFPPINDSTYDNINFVYIYNLKRLFDFLNISY 2400
WD40-rpts
Query 2401 IQFICKNKKNNIHGEYEDENYYSEHTKDNNNNNNNNNYKNEYNNIKNVSVNYQKYDQGHNEKNEKRYIYDLFDQDYNPIL 2480
WD40-rpts
Query 2481 EVINFVYTEMFPYTNKLTFFIYNKIIEIYKNQDNYDHNNSEDNNNCEKNEDIIIHKYMILLEYFICILDMCLYIHLLLKH 2560
WD40-rpts
Query 2561 KENKISIYNNIRKFNSQNIDLCLFIYKLLYISVNTNILKNIISNFSLNVIYNFLQINKNYYVEMKNNYYKNYDHFINIDS 2640
WD40-rpts
Query 2641 TPENQEQNQNYENDLLIKNELYKKKRNEQSQINISILFNFLFFLLSKYTKNKKKKKNYIDIPSNHLKQYNNNNNNNIYSN 2720
WD40-rpts
Query 2721 IINVYELEKGIDIENVTFQNHEKEYLKIDIFFLKNILCMLHVFFTRGIYLDIDLINNDISYMNINILIQHQYKIFLSKQN 2800
WD40-rpts
Query 2801 INILKEKIKNKKCNNNNNNKYNNDNNNNINPFGCNITSSNHNFYSDNSFNNLGTNQKSINHPQYINDINYINNITNNDIK 2880
WD40-rpts
Query 2881 YLDIFKKCFLNNYMKIFINFCNIYNDIIIECLYIQLLLFFFKYMIQTLSYEISKEYTKNFLCHTKRHLLVYFLKYYIIDK 2960
WD40-rpts
Query 2961 QVCKFLKKIYFIILKYVIYMQNINMEEVRSDEPYVNKYDKCDEEYIKKEDKIEQNIKKKNNTNNSNKNNNNKNNNNNNNN 3040
WD40-rpts
Query 3041 NNNNNNNNNNNNNNNNNNNNCNSCSYDINKYNYILKDQDVYKNYCKLFYEYTINKYRKIQTSFTQNININPKEEKYYQNF 3120
WD40-rpts
Query 3121 DTQNIYLNNNISSQTLYKNIFNNQNCVKRNSSTNKNNICMIHLYCPNCEEIKILFLSIIKLLSFSLDHFPFFFFILKNDK 3200
WD40-rpts
Query 3201 KENSNNEIDNNICNDNIVFLCEQIFYFLNKKNIYKNYSKMYISSYYQKYFLKIFIKLLYWDEQQTMNNLHKYEIYILKNK 3280
WD40-rpts
Query 3281 NQHKIYDPHNNNDNNQTKGLNNYTNICEQKYNHIKYNMDNNINHINYNTDDNKIHNSFNNHHADNYNIMNKVNYHIRNHH 3360
WD40-rpts
Query 3361 NMFSKNFTQDNIFYINNFLNLILINKYKKEYNIFTKIYDKIYYYILIVSICYKDKNFLSLLLSKYELFYEEYNELLQTYL 3440
WD40-rpts
Query 3441 KYVINNKNLMNMKKIKNEKMIHTFLYILISYIYIYLNDLYNIFFTQIKNSLTLPSFFNNIIYINSIENNKQKHSPYNTTN 3520
WD40-rpts
Query 3521 EEITNNGKNDIIINNYYTIIIYTMYQNLINKKKNWNQFLDNYNDDKIKNVVINNIFHNNIIYLFILYIINDNKYGIKQHR 3600
WD40-rpts
Query 3601 TSHEHGHYSSNTIKKNSDILYKKEHINIQNKLRKEENQNEKDRYCIYNNIHNVDNSCNIYNTHNIPITYNTQHNKLCENM 3680
WD40-rpts
Query 3681 NYSPYDFNNQNVMYSTLHIEESNKTFINKVTINIILFFLLFFYDYYSNNYKIKENILIQICRHIIEHFSTLFNQDFISIH 3760
WD40-rpts
Query 3761 ETYKELMNLKREMKKKTNIIQKNNPIKNYMTNLKSSNDNNLILHKKENQLQDQTNVCTRKKFSNYLKRKDKKIVCSFSRD 3840
WD40-rpts
Query 3841 KNKKNVPLKTELQPEANDTKNNENIKNNVNIINSSDKKKENIDYLIDRHIFILFNIKERLKRDKKLLFLYTINSFRVIQI 3920
WD40-rpts
Query 3921 YNNISNIIFKYKYICILLGKLRYFTNQDILKYIFRCIQYYWSDKLKEEYCHRSLFLKNNINNFDIEIGYFSYIYIHNFFH 4000
WD40-rpts
Query 4001 FLSCYLLYDINTLYKFCSNEFNCIDILNNYVKDLLKLQKEHGTYIGMVILNFYLVVMNTYFFDFSFYEKHSHFINQETNK 4080
WD40-rpts
Query 4081 DDSLNNTDTKLKQYVMNNFRNDKRKKDLGKNNLQKSNEHITYYSCIKKLYSQFNKSKFLHFLVNYIINNINNINNNHINV 4160
WD40-rpts
Query 4161 NIYADGNINKNINQNINKNINQYKNMNKNTHVNVNINDNVNYNVSRCNSHVNNYVHVNKSKIDKERDMNILFILLQFISY 4240
WD40-rpts
Query 4241 NMIFIDNKNDIYKLSNVLIKFLKDKKKKEEEDDISILISYYYIILFFNSCFLNCSNIDERLINLLLNVDKNDNLWFNFIF 4320
WD40-rpts
Query 4321 LSPKQMKRIHNQNKKDILILIKFSILHMYLLLLKNKSISKKSILYISSDINIYFVFIYILNEIYEYFKNINIMQNIKRIE 4400
WD40-rpts
Query 4401 QVNKNNNNNNNNKNKNTQKNQNQNKINDINVSSIYKTSNINNNHIINQEKLIYNDNTIKNNYSNNKYNLYHTNYTEQLNE 4480
WD40-rpts
Query 4481 KENKNMKYFYLYCELLVILTQIIKILNNNDFNKYITIQHNKDKETLLTQFKNLYSKIKKELTYINQLIKSIKYTILIHPL 4560
WD40-rpts
Query 4561 MIHIHILHQFYLSIYIKEYYFFHKSFFKYDIFMIDFVHIIKNKRKAFIYKENNDDKKKNEDNTKILGNQNEYIYNNKLIT 4640
WD40-rpts
Query 4641 NKNVSNANIHFPIKSDIYGEEQNCYNKNINNSNTTRWKNELNKEKINFYLFFNSPKNYNFQINNLCSSLIQNEYHDSLNK 4720
WD40-rpts
Query 4721 YFSTIFQPSNDDSSSSLKYDNEQIKIYVDYIYDAVNYALQFFNTI 4765
WD40-rpts
 1 WD40-repeats found in QUERY=EG_PF14_0710 (Len=4765): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 14 528-592 2.77 229.09 0.04974 12.5% 36.49Multiple sequence alignment of 1 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 528-592 NKNIYYKINNFTHKINILCYHTQMKYNYMEFLGMNIIKKKISVDDFIYMHKEIHKILNEYIYIFN WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRL-----------VSGSEDG--------------TIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |