WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: EG_PF14_0705    [Plasmodium falciparum]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = EG_PF14_0705 (Len=114)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF14_0705, Len=114):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTIEIPLLLSTTFPFIWKTGIAQLSFAKTGGSLAALKGSSLLLSKAASNGKAGLLATTSSQLDNIKEAAQKLVEEIEKNI 80  
WD40-rpts      (___________________________WD 1__________________________)                     

Query       81 NLSLLFYNIDDEESAGYYLMKRREEYEQIKISFI 114 
WD40-rpts                                        



1 WD40-repeats found in QUERY=EG_PF14_0705 (Len=114):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-59       2.85  232.23  0.04523       22.5%     21.95
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1    1-59     MTIEIPLLLSTTFPFIWKTGIAQLSFAKTGGSLAALKGSSLLLSKAASNGKAGLLATTS

   WD40 Template    TGECLRTLSGHTS------GVTSVSFSPDGKRLV-------------SGSEDGTIKVWD


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Last modified: 09 Jan 2019