Accession: EG_PF14_0654 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = EG_PF14_0654 (Len=2008)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF14_0654, Len=2008):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMLNNNITTLALNIPKDKKKKCYNLFIKKVKVLLFYIKKRVIDISCYLKSYSSKNRYPFYDDPYDYEEKYEKGKNVYVYA 80  
WD40-rpts                                                                                      

Query       81 LLYPIINSLYNIINLLYTISLKYFLYVFFNAIRKKKRNKLNDNINRIKLERNKTLLKNYDRCIFLTNDMNNCISHKQIIE 160 
WD40-rpts                                                                                      

Query      161 ICKNFIINVIYDVDNLEFDNNDKDKIYKCLNNCENINRMKEIFIKKIKNLYNFDFENALYISDESLIKRKLHFKNTYESN 240 
WD40-rpts                                                                                      

Query      241 PFSFYKNKEKKGKYEKKLDLINMYDELYLHAYIIRNNINIKNSKNIIKNVYNKNIFSILINIFFKNCTNVIFVIFVIACI 320 
WD40-rpts                                                                                      

Query      321 FQQIRIIKTSHYIYFVQIFYFIFICCILRDICIIKKKREHIKQIKRKTYKRLTPLGLIDVLYCDIKVGDILYIPQFEVIP 400 
WD40-rpts                                                                                      

Query      401 ADIILLKNCTNDDILISSKNHDGYKDLKIKKCVKVTNILANIYDLFLMKIKILVEKPHCHFDRMKGLLLLLNSSEVTNTI 480 
WD40-rpts                                                                                      

Query      481 VNDITTLENIYFGKSNIYNMRNKDINKDNISICQFSFIYIIQDTYVELYYNFLKYLFARCILCSNNRVEENKTNKMLSCS 560 
WD40-rpts                                                                                      

Query      561 HFFLNNTKDISTRQLQNNHNNNINSSYFKGNEKSIHSSSDSCSYSSDIYLCMNKIDSYPIFHNLKDEHINSKYDVIKHDG 640 
WD40-rpts                                                                                      

Query      641 NNKKVERIKSDYISEEYNNRFGTYYDDIFNLKEKINNKLFRKYKESINIDNVIWDECRLIQSSIYGLVIYTGIDKKSNII 720 
WD40-rpts                                                                                      

Query      721 NQNNKIKEKRKNDILFFNDINYKMKILLLTVISINCILSINEQNILDQNIFLIYIKYFFLLLFHLPNINCCYIFIIHKLY 800 
WD40-rpts                                                                                      

Query      801 SFILWTNNNNNIIINTNIHTNTNTHTHTHTHTHTHFNTHTNIYTHTNEYKRDDHFNNYIIYNYNIMKSLYNTQYILYDKI 880 
WD40-rpts                                                                                      

Query      881 GTLTKDNLLKIHKFDFIFDEFLIDTYSALFFQTFFKIVDFKKFFSNNINENNDKEINKMILHNIDKNYDTYNIIKDTSKV 960 
WD40-rpts                                                                                      

Query      961 YKNIFNKILSYSSSEINKIFLTFLCILFCNDIIITKVKRLKKEEKIKERDIYNIKDTHIYNIKDKHIYNIKHKILFSTKE 1040
WD40-rpts                                                                                      

Query     1041 DETLFLNFLRFLGIQLYYKNDYMFLLCIKNNISLKSCGHITKEKEKKRYRKKNNILNKQVNKVKHRNIDLQQIYGFKKNK 1120
WD40-rpts                                                                                      

Query     1121 NCGKKWSVKKNIFFSNSLKKDHIFNYSYAESQTSINIIKKNKGIKNKHPHKFYDNFRNNHKNEYNSTSQSDYCCNDNDND 1200
WD40-rpts                                                                                      

Query     1201 DDEYTSNNCSDSDTSGCPDFKGIKRNHHDIHCNNKRELKKKNVYQDEYKKKQTECTFQILDIFQSKQPYKLISILMLYNN 1280
WD40-rpts                                                                                    (_

Query     1281 QIYYLLKTYDEYTIYMLCDQESNETNKEKIIKSVQYLLKNGFGILLFGYKVVPKNEYEIYKKNCTKENKKNYFQNVFNRN 1360
WD40-rpts      ______________________________________________________WD 1______________________

Query     1361 VTILGIFSFKEEIKNGSKQIINLFKEAGIKTWILSSDKKRNLLSICKSIDLIKEGTITCYLNKNKLIRIYKKDNTATTTT 1440
WD40-rpts      ________________________________)                                               

Query     1441 TTTTTINNNNNNNDILFDCYKNENVIETYINKSYNNKITSIDMCKQKCSNDTFLILNNTNIKFDDMNSTLLLSNNRMNIS 1520
WD40-rpts                                                                                      

Query     1521 KEMTYCYKNINTCNINKCPQLLKNNDICKKKNVDNKMVQMEQENCERSLLNNNSNSFNKNVCIHQNILRYITIRGKGSHD 1600
WD40-rpts                                                                                      

Query     1601 ARNELDISYILKKDKKACYILKCMLYYNFDENYKGNSKVHNNYSKEKINNDLMKLNDIKSVVYIISGDIVEYYLKYDEIN 1680
WD40-rpts                                                                                      

Query     1681 FINVLKNSKLVLFYKCNCIVKGKIVRALKKYSKDNICSVGNNIKDINMFKESDICIFIDNNNNNNNNDSNYNVCKLYADL 1760
WD40-rpts                                                                                      

Query     1761 VLKNFDELGNFFFIYGKKIYVNFILLIKGIYYRGMSLLFLQFYFSYFFKCKICIFSNTFLFIYFVLFLMMTSICIICSLK 1840
WD40-rpts                                                                                      

Query     1841 CNDKYDDILYNSNKNVLNKNFLFKNLLKIDNFTLISFYKTLLFCLNESCLIFILSYYYFLNINYEINTLTTLFITHIFKS 1920
WD40-rpts                                                                                      

Query     1921 LFLFIETYNYLIIFIIIHLLFIIIYIFILLLLHKYHFIYFNITIEIIKNNLIVNSIINFPSCMYYIYIYIKKKKIQQYHQ 2000
WD40-rpts                                                                                      

Query     2001 YEKKIHIK 2008
WD40-rpts

1 WD40-repeats found in QUERY=EG_PF14_0654 (Len=2008):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 42  1279-1393     3.31  251.28  0.02529       17.5%     28.07

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1279-1393   NNQIYYLLKTYDEYTIYMLCDQESNETNKEKIIKSVQYLLKNGFGILLFGYKVVPKNEYEIYKKNCTKENKKNYFQNVFNRNVTILGIFSFKEEIKNGSKQIINLFKEAGIKTWI

   WD40 Template    TGECLRTLSGHTSGV--------TS------------------VSFSPDGKRLVS-------------------------------GSE--------D----------GTIKVWD