Input parameters:

  Query = EG_PF14_0412 (Len=819)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (EG_PF14_0412, Len=819):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNDCDTKKFRDISEKIHGKYVPIIKFGGSKKYIKNDYKNEDADINNISYASEFLNNNVDIYYDNKYGINKVCFSPQGKYV 80  
WD40-rpts                                                            (_________________WD 1____

Query       81 AGCTSNGFIYLYDLYENKLLSKICTRIDNIQDIAISDNDKYIYACGENRLIEIFDIYEENRKRCNNDIGKYVDVSIPSII 160 
WD40-rpts      ____________)                                                                   

Query      161 KNTKLKMKNCSESDNMKHNNNILSKNALDNKYIPYHKTKYKNISNGKSIYIPIYNYEDLIKSNINMIDLNYVKLNKVNEI 240 
WD40-rpts                                                                                      

Query      241 INKSTFLIKESHEYITSCIAIPNICNFLVYSGGGDGVLKIWDLRMNLFNISKKSSRSNKSDIIFIDNKNPFASICSHEDT 320 
WD40-rpts        (_________________WD 2_________________)                                      

Query      321 VTSITFNKTIDHEGSYKLKKEQRKKKKIFNSKKECIDNKNVYSSSLDCENMNDSTSDYEEDRESDNSSVSSPHSSICYSS 400 
WD40-rpts                                                                                      

Query      401 LTFDLSKDKFNNILMTSGYDGYIRLYDISNNIIKSFYDEEKSITHCMFSNNNKYIISTNKSKFGKVFDFMYMNNKMNSKN 480 
WD40-rpts                                                                                      

Query      481 MATYLNNYKTYCLNKPLIRKENLENENYHDTINEDDIFSSQLYNDKEYALCKIGNIFEDEELEERIKIVNELNRKINEQE 560 
WD40-rpts                                                                                      

Query      561 NKHFEPNKNDNNNNNNNNNNNNKDNNNKDKNKNNYKKYDNNKYYNNNDNNITVEHDDYPESNYSNSDSSIYDENTIKSNT 640 
WD40-rpts                                                                                      

Query      641 FYEHVNNKLEPTWSLFVDNLKYMDLVPYDNINDSLKYNYNYVKSYFNHNNFLNTNYHSLNIDEKEPSLYYMLSEIISNED 720 
WD40-rpts                                                                                      

Query      721 DIPKFSSCIAGDKCIIPSIDTYAHVYDLYTGFHVNSIKNLYLPNYYVDNHSYYSHSIDTNKKRISFLTSVDTYPKNQNII 800 
WD40-rpts                                                     (_____________________WD 3_______

Query      801 ATSNGYPDGSIVLWAFVAF 819 
WD40-rpts      ______________)    

3 WD40-repeats found in QUERY=EG_PF14_0412 (Len=819):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    55-93       4.22  288.89  0.00794       25.0%     37.39
  WD 2:  Seg 13   243-282      4.72  309.44  0.00420       25.0%     39.34
  WD 3:  Seg 30   768-815      3.39  254.78  0.02271       27.5%     32.02

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-93     -NNNVDIYY-----DNKYGINKVCFSPQGKYVA-GCTS---NGFIYLYD
   WD 2  243-282    -KSTFLIKE-----SHEYITSCIAIPNICNFLVYSGGG---DGVLKIWD
   WD 3  768-815    DNHSYYSHSIDTNKKRISFLTSVDTYPKNQNII-ATSNGYPDGSIVLWA

   WD40 Template    TGECLRTLS-----GHTSGVTSVSFSPDGKRLV-SGSE---DGTIKVWD