Input parameters:

  Query = DH11.2 (Len=411)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (DH11.2, Len=411):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRNRCRCVRLPVVRVQDSSDLPQLPDEIIEIIVSKVLPTELVAYGWDQVSRSFGTFVHRTLCSKVYYCALHDPVWELYQ 80  
WD40-rpts                                                                                      

Query       81 TTRSCYDLKKFDKFLILLIKKYICQVEDIVLPVSLFSHIQHLLEKHSFLAATSGTACNFRHPQPGVAFTNLTKLTIQIGA 160 
WD40-rpts                                                                           (__________

Query      161 ECGGLTLSHNFENLKASSSLCKTLQEINLDIVLSDNEDVTCAGFRELLRFLKEISYKLTVWNIRLSDNTTTGQGWSGPAN 240 
WD40-rpts      ________________________WD 1_________________________________)                  

Query      241 LNRYRNKMFICYIRTMMDLSLQINQLELVDKRKASPYMLVMAHGRRTIYMFPEFKICRSLVICYDIGLIAPVFSHENDRF 320 
WD40-rpts                                                                                      

Query      321 DDLMHFEVDESHVLYKADLLEYLKSAHELREVRVVIPSTFYSRVSRCTEGCFSNPDFACFRADGWCSVPAKLPGAHFEIV 400 
WD40-rpts                                                                                      

Query      401 ANDGHASVVTQ 411 
WD40-rpts                 

1 WD40-repeats found in QUERY=DH11.2 (Len=411):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   150-222      3.39  254.61  0.02283       25.0%     27.11

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  150-222    NLTKLTIQIGAECGGLTLSHNFENLKASSSLCKTLQEINLDIVLSDNEDVTCAGFRELLRFLKEISYKLTVWN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLV----------------SGSEDGT-----------------IKVWD