Input parameters:

  Query = D2030.9a (Len=571)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (D2030.9a, Len=571):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNWITSTFLRFDLFQRHQPNRFLEYTRVQHSNQSPAYSVRTAAEIVAHQRMKPNHSNDSDTDFSSDDEGCPKMTPHEEQ 80  
WD40-rpts                                                                                      

Query       81 QMFEREQHIAFSGRCHIGDPESCTQLRNEINSRCGPRPSTSNNMEFILNRDLQKRGTSISNPRTVARVLNSHLPNQKRRV 160 
WD40-rpts                                       (________________WD 1_______________)   (______

Query      161 DRVATKSFCTQYIQNGTKIVVASQDEKIRFYQRNPDKSKYRSKYMKSDELRVDQCGWSILDTAISLNGDLIAYGTWKDAV 240 
WD40-rpts      ___________WD 2________________)          (__________________WD 3_______________

Query      241 FVGKLDFTERQNITWFPIDLNGEPGRDHCAVFCVKFSDSSEQIVCGTSQYSIHVFDVEQRRRIRTIVNAHEDDVNSVCFA 320 
WD40-rpts      ___)         (___________________WD 4__________________)(___________________WD 5

Query      321 DLGSNLIYSAGDDGLVKVWDKRAWSDGDVEPVGVFAGHRDGVTHVDSRQDERYLLSNSKDQTIKVWDLRKFSNMSGVEAT 400 
WD40-rpts      ___________________)        (_________________WD 6________________)   (_________

Query      401 RACVQSQHWDYRWQPAPPGLCQPVAGDTSVMTLRGHSVLHTLVRANFSPESTGRRYIYTGCARGEVVVYDIMSGTVSRRL 480 
WD40-rpts      ________WD 7________________)_________________WD 8___________________)   (______

Query      481 KGHTAVVRECDWHPTENEIVSSAWDGVTTVWTWDERQEGVIAPYDHPNISQFGDEDSCDELFQPVKKQCRRQRKTMSSRG 560 
WD40-rpts      ___________WD 9________________)(_____________WD10____________)                 

Query      561 HPCSSSSISQN 571 
WD40-rpts                 

10 WD40-repeats found in QUERY=D2030.9a (Len=571):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   114-150      4.50  300.52  0.00554        7.5%     23.42
  WD 2:  Seg  6   154-192      7.76  435.13  8.5e-05       15.0%     49.59
  WD 3:  Seg 11   203-244      7.46  422.73  0.00012       10.0%     50.80
  WD 4:  Seg 15   254-296      6.75  393.34  0.00031       27.5%     47.75
  WD 5:  Seg 18   297-340      7.80  436.97  8.0e-05       32.5%     50.03
  WD 6:  Seg 22   349-387      9.60  511.42  8.0e-06       45.0%     54.57
  WD 7:  Seg 26   391-429      6.50  383.34  0.00042        7.5%     12.17
  WD 8:  Seg 27   427-470      5.49  341.47  0.00156       27.5%     54.38
  WD 9:  Seg 31   474-512      9.68  514.39  7.3e-06       35.0%     55.37
  WD10:  Seg 35   513-543      3.62  264.37  0.01691       15.0%     36.09

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  114-150    -C--G---PRPSTSNNME----FILNRDLQKRG---T-SISNPRT--VARVLN
   WD 2  154-192    -P--N---QKRRVDRVAT----KSFCTQYIQNG---T-KIVVASQDEKIRFYQ
   WD 3  203-244    KYMKS---DELRVDQCGW----SILDTAISLNG---D-LIAYGTWKDAVFVGK
   WD 4  254-296    -T--W---FPIDLNGEPGRDHCAVFCVKFSDSS---E-QIVCGTSQYSIHVFD
   WD 5  297-340    VE--QRRRIRTIVNAHED----DVNSVCFADLG---SNLIYSAGDDGLVKVWD
   WD 6  349-387    -V--E---PVGVFAGHRD----GVTHVDSRQDE---R-YLLSNSKDQTIKVWD
   WD 7  391-429    -F--S---NMSGVEATRA----CVQSQHWDYRW---Q-PAPPGLCQPVAGDTS
   WD 8  427-470    -D--T---SVMTLRGHSV--LHTLVRANFSPESTGRR-YIYTGCARGEVVVYD
   WD 9  474-512    -G--T---VSRRLKGHTA----VVRECDWHPTE---N-EIVSSAWDGVTTVWT
   WD10  513-543    ------------WDERQE----GVIAPYDHPNI---S-QF--GDEDSCDELFQ

   WD40 Template    TG--E---CLRTLSGHTS----GVTSVSFSPDG---K-RLVSGSEDGTIKVWD