Input parameters:

  Query = D2013.3 (Len=360)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (D2013.3, Len=360):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTVRHEEYMFSCDLKKRRVFEEQQVSRALLNFRWTKHIPMGCDQTGKGHQEDISAIDIDDGDQMLLFGSHSGSVSVAKYK 80  
WD40-rpts                                             (_________________WD 1________________)  

Query       81 YLDRKKWKKPMTLKLAKQSLKTIKWCPIDLRLFMVTTASNWMRVCDSTMEKVVHGKQFEGDVYFDWNEYNMTNSKVAVAD 160 
WD40-rpts            (_________________WD 2_________________)(___________________WD 3__________

Query      161 GGRSMKIIDFRVGMDLPQSIYWNDEPIDVVQWYPSKHHYLYAGRRDGTIGLFDIRSTRGAIAEKSLHKSQIYGLKISADG 240 
WD40-rpts      ________)                                       (_____________________WD 4______

Query      241 HRLISADRSGYIHVADTWDFSTKFDFSCEFDPLMQRRPNLEFIYEKDFYVATNFEKLTIIRFSDNDKSRRNPDFREVEAK 320 
WD40-rpts      _______________)          (_______________WD 5_______________)        (_________

Query      321 VLWDKPFIFRKSSYEIITGFNYNHLNILSLDRSTKDQDEV 360 
WD40-rpts      ________WD 6________________)           

6 WD40-repeats found in QUERY=D2013.3 (Len=360):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    40-78       8.98  485.70  1.8e-05       22.5%     52.34
  WD 2:  Seg  8    87-126      6.92  400.32  0.00025       15.0%     52.94
  WD 3:  Seg 12   127-169      5.26  332.05  0.00208        7.5%     46.48
  WD 4:  Seg 19   209-256      8.94  484.13  1.9e-05       35.0%     44.59
  WD 5:  Seg 24   267-302      4.49  300.13  0.00560        7.5%     27.08
  WD 6:  Seg 29   311-349      4.99  320.88  0.00295        7.5%     29.64

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   40-78     -M--------GCDQTGKGHQED---ISAIDIDD-GDQMLLFGSHSGSVSVAK
   WD 2   87-126    -W--------KKPMTLKLAKQS---LKTIKWCPIDLRLFMVTTASNWMRVCD
   WD 3  127-169    ST--------MEKVVHGKQFEGDVYFDWNEYNM-TNSKVAVADGGRSMKIID
   WD 4  209-256    IGLFDIRSTRGAIAEKSLHKSQ---IYGLKISA-DGHRLISADRSGYIHVAD
   WD 5  267-302    SC--------E----FDPLMQR---RPNLEFIY-EKDFYVATNFEKLTIIRF
   WD 6  311-349    NP--------D-FREVEAKVLW---DKPFIFRK-SSYEIITGFNYNHLNILS

   WD40 Template    TG--------ECLRTLSGHTSG---VTSVSFSP-DGKRLVSGSEDGTIKVWD