Input parameters:

  Query = D2013.2 (Len=415)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (D2013.2, Len=415):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAIINQRVEQGESSMGGAKPALLHRITGHVARINDVILLSKDEGVWTASDDRSVRLYLKRDNDQFWPSIHHFMPVAPTS 80  
WD40-rpts                          (_________________WD 1________________)   (_________________

Query       81 LYYSEETYKLLVGLINGNVYEFSVADDFNSMTESRKWTCHAGPISGLGFALSSELIFSCSRDKSIVWHCSENSNKMGSYL 160 
WD40-rpts      _WD 2_________________)       (_________________WD 3________________)   (_______

Query      161 LENSCTAMVIDLPFVFVGDHGGHVTVLRIVDNQPNLVSKLSAHTNAITSLTWDGNKKVLYSGSSDHLIIMWDIGGGRGEA 240 
WD40-rpts      __________WD 4________________)  (_________________WD 5________________)(_______

Query      241 YELNGHNGKVTTLCAAPAAKRLFSADEHGKLMCWDMNCKRVETPEWKTSDCCQKCNQPFFWNLQAMWQRKVVGLRQHHCR 320 
WD40-rpts      ____________WD 6__________________)                                  (__________

Query      321 TCGSAVCGSCCDNWTTYPPMGYETKIRICNDCNARMKDNPQNFNLTPLAIPHEIHTGITAMHLQETLGLLVTSGQNRVIM 400 
WD40-rpts      ________WD 7_________________)              (_________________WD 8______________

Query      401 IWDVRSVCSAPSGSQ 415 
WD40-rpts      __)            

8 WD40-repeats found in QUERY=D2013.2 (Len=415):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    21-59       8.03  446.28  6.0e-05       15.0%     53.21
  WD 2:  Seg  6    63-103      6.99  403.54  0.00023       20.0%     52.75
  WD 3:  Seg 10   111-149      7.78  435.99  8.3e-05       17.5%     52.47
  WD 4:  Seg 14   153-191      3.55  261.17  0.01867       12.5%     25.55
  WD 5:  Seg 18   194-232      9.89  523.03  5.5e-06       37.5%     55.78
  WD 6:  Seg 22   233-275      9.28  497.94  1.2e-05       37.5%     56.45
  WD 7:  Seg 29   310-350      6.40  379.00  0.00049       10.0%     38.79
  WD 8:  Seg 32   365-403      7.81  437.34  7.9e-05       20.0%     52.12

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   21-59     -P---ALLHRITG-HVARI--NDVILLSKDEGVWTASDDRSVRLYL
   WD 2   63-103    -N---DQFWPSIH-HFMPVAPTSLYYSEETYKLLVGLINGNVYEFS
   WD 3  111-149    -M---TESRKWTC-HAGPI--SGLGFALSSELIFSCSRDKSIVWHC
   WD 4  153-191    -S---NKMGSYLL-ENSCT--AMVIDLPFVFVGDHGGHVTVLRIVD
   WD 5  194-232    -P---NLVSKLSA-HTNAI--TSLTWDGNKKVLYSGSSDHLIIMWD
   WD 6  233-275    IGGGRGEAYELNG-HNGKV--TTLCAAPAAKRLFSADEHGKLMCWD
   WD 7  310-350    KV---VGLRQHHCRTCGSA--VCGSCCDNWTTYPPMGYETKIRICN
   WD 8  365-403    -L---TPLAIPHE-IHTGI--TAMHLQETLGLLVTSGQNRVIMIWD

   WD40 Template    TG---ECLRTLSG-HTSGV--TSVSFSPDGKRLVSGSEDGTIKVWD