Input parameters:

  Query = CC4.3 (Len=510)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (CC4.3, Len=510):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSIEIESSDVIRLIEQFLKESNLHRTLAILQEETNVSLNTVDSIDGFCNEITSGNWDNVLKTVQSLKLPAKKLIDLYEH 80  
WD40-rpts                                        (_____________WD 1____________)   (___________

Query       81 VIIELVELRELATARLVARQTDPMILLKQIDPDRFARLESLINRPYFDGQEVYGDVSKEKRRSVIAQTLSSEVHVVAPSR 160 
WD40-rpts      _______WD 2_________________)                                       (___________

Query      161 LLSLLGQSLKWQLHQGLLPPGTAIDLFRGKAAQKEQIEERYPTMMARSIKFSTKSYPESAVFSPDANYLVSGSKDGFIEV 240 
WD40-rpts      ____________WD 3______________________)    (_________________WD 4_______________

Query      241 WNYMNGKLRKDLKYQAQDNLMMMDAAVRCISFSRDSEMLATGSIDGKIKVWKVETGDCLRRFDRAHTKGVCAVRFSKDNS 320 
WD40-rpts      _)           (_________________WD 5________________)   (_________________WD 6___

Query      321 HILSGGNDHVVRVHGMKSGKCLKEMRGHSSYITDVRYSDEGNHIISCSTDGSIRVWHGKSGECLSTFRVGSEDYPILNVI 400 
WD40-rpts      ______________)   (_________________WD 7________________)   (___________________

Query      401 PIPKSDPPQMIVCNRSNTLYVVNISGQVVRTMTSGKREKGDFINCILSPKGEWAYAIAEDGVMYCFMVLSGTLETTLPVT 480 
WD40-rpts      WD 8__________________)(___________________WD 9___________________)   (_________

Query      481 ERLPIGLAHHPHQNLIASYAEDGLLKLWTD 510 
WD40-rpts      ________WD10________________) 

10 WD40-repeats found in QUERY=CC4.3 (Len=510):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    35-65       4.97  320.11  0.00302       17.5%     31.53
  WD 2:  Seg  4    69-109      5.32  334.43  0.00194       12.5%     31.73
  WD 3:  Seg  9   149-199      6.13  367.96  0.00068       10.0%     43.09
  WD 4:  Seg 13   204-242      8.83  479.35  2.2e-05       40.0%     52.39
  WD 5:  Seg 18   254-292      8.70  474.24  2.5e-05       37.5%     48.11
  WD 6:  Seg 21   296-335      8.94  484.09  1.9e-05       40.0%     53.77
  WD 7:  Seg 25   339-377     10.70  556.47  2.0e-06       42.5%     56.89
  WD 8:  Seg 29   381-423      6.16  368.95  0.00066       22.5%     53.05
  WD 9:  Seg 33   424-467      7.05  405.79  0.00021       15.0%     52.04
  WD10:  Seg 37   471-509      8.62  470.71  2.8e-05       25.0%     53.15

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-65     TN----VSLNTV-DS---------IDGFCNEI-----------------TSGNWDNVLKTVQ
   WD 2   69-109    -L----PAKKLI-DL---------YEHVIIELVELR----ELATAR--LVARQTDPMILLKQ
   WD 3  149-199    LS----SEVHVV-APSRLLSLLGQSLKWQLHQGLLP----PGT--AIDLFRGKAAQKEQIEE
   WD 4  204-242    -M----MARSIK-FS---------TKSYPESAVFSP----DAN--Y--LVSGSKDGFIEVWN
   WD 5  254-292    -Y----QAQDNL-MM---------MDAAVRCISFSR----DSE--M--LATGSIDGKIKVWK
   WD 6  296-335    -G----DCLRRFDRA---------HTKGVCAVRFSK----DNS--H--ILSGGNDHVVRVHG
   WD 7  339-377    -G----KCLKEM-RG---------HSSYITDVRYSD----EGN--H--IISCSTDGSIRVWH
   WD 8  381-423    -G----ECLSTF-RV---------GSEDYPILNVIPIPKSDPP--Q--MIVCNRSNTLYVVN
   WD 9  424-467    ISGQVVRTMTSG-KR---------EKGDFINCILSP----KGE--W--AYAIAEDGVMYCFM
   WD10  471-509    -G----TLETTL-PV---------TERLPIGLAHHP----HQN--L--IASYAEDGLLKLWT

   WD40 Template    TG----ECLRTL-SG---------HTSGVTSVSFSP----DGK--R--LVSGSEDGTIKVWD