Input parameters:

  Query = C56E10.3a (Len=531)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C56E10.3a, Len=531):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTSTTVKRARVTARIAQAENTSLPTSSEITQQLLEQTEGKRKQLDKKCGEYEQLCKKTAKLKAEKSRLDVESTQLTAQS 80  
WD40-rpts      (_______________________________________________________________________________

Query       81 DEIDQSFTKVEQNAEASFLLQQQKNNEMNEAVQQWAAVDVKEEKLYVDLTHETELEKQFKERYDEITRNLELLGAEAGSD 160 
WD40-rpts      ___________________WD 1_________________________________________________________

Query      161 EKLYYQMESAFDNDMRTEKTLEQYLTRLIDDVFVNQRRLEDIQIGTSRGRANFRQAEKALRDQRTRHRRLSSQITGTTVT 240 
WD40-rpts      ________________________________________)                                       

Query      241 KLRTKIIKSVYDDGEMKLCSESKAKGYRQRMMFVIKLLRISFGFQFYPPQILRDTEHEAQRVLNHELKQLEGTVSGQRQE 320 
WD40-rpts                                                                                      

Query      321 TQALGKDVKWLKENIQVTLRQADIRFYTSKTEELIEKAKKEDQEKLTLQQKSQKSGGLLSADIFASRGDVLELREKRLIM 400 
WD40-rpts                                                                                      

Query      401 ENERNLLTNQIKENSLECDRLNSQWMILKGFAKSVDFDTLRQLNGEVEHWKLKVNQLQDQIEKLQKMENYASLANGQLRT 480 
WD40-rpts                                                                                      

Query      481 NLALLKPYDEEYQEFESLVETKKQLNSQLARQEFKKSVEKLKQDGDIEIIF 531 
WD40-rpts                                                         

1 WD40-repeats found in QUERY=C56E10.3a (Len=531):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-201      3.38  254.09  0.02320       27.5%     10.01

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-201    MSTSTTVKRARVTARIAQAENTSLPTSSEITQQLLEQTEGKRKQLDKKCGEYEQLCKKTAKLKAEKSRLDVESTQLTAQSDEIDQSFTKVEQNAEASFLLQQQKNNEMNEAVQQWAAVDVKEEKLYVDLTHETELEKQFKERYDEITRNLELLGAEAGSDEKLYYQMESAFDNDMRTEKTLEQYLTRLIDDVFVNQRRLED

   WD40 Template    TGECL--------------RTLSGHTS--------------------------------------------GVTSVSFS--------------P------------------------DGKR------LVS----------------------GSEDGTI-------------------------------------KVWD