Input parameters:

  Query = C54G7.4 (Len=1199)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C54G7.4, Len=1199):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSVFRKFNLGLPEHGQLHFAEWNYNSNYIACGGALGKLKVVKIGTDATDLNKSPNAATLVVNQALEGHNATVMNATWNEN 80  
WD40-rpts      (__________________WD 1__________________) (________________________WD 2________

Query       81 NQKLTTSDTSGLIIVWGMFNEQWCEEMINNRNKSVVVSICWNLEGTKIAIAYADGNVIVGTLEGNRIWNKELEIQLAACE 160 
WD40-rpts      ________________)(___________________WD 3___________________)                   

Query      161 LDIPMHCLEAEDLEQALAKKEHQKEEIVCLKYWSPTLKSKTILDEMERDFERKLEKDREVTGTAIFTNFPTKPPPKELPE 240 
WD40-rpts                                                                                      

Query      241 HEKNTEPYQPVPPDRPRFVVAYARGMMQLMRSLNDPEPVVVSIPNFKITGAKWSPNGAFLAVCGNDSDKDEPTFSKIHFL 320 
WD40-rpts                                        (_________________WD 4________________)       

Query      321 SAYGHIVGYFQTNDSCITGICWESTGLRMAIAAAGTLLIGQIRPEFKWGSIEETIVYVYQKEELYQYGIMFYDYKTDEKT 400 
WD40-rpts         (________________WD 5________________)                                (______

Query      401 VKTVTHFENMAFYREHCVLINRQDDGVIPHYFCQLCNSIGTSLDYNVTTVRPKFACVNGICAVIASEDRYFIWHFVLPKF 480 
WD40-rpts      ___________WD 6________________)                                                

Query      481 NSVQAGIHVPGKSGDYVLEEQQRTIEYGTKRLLGSKDEICALCIGDTFFMMALLSGGIYRVSLNDGVITNSYPVSPSINS 560 
WD40-rpts                                                                                      

Query      561 IKLNCTFTRLAVIKLVEQVPFQFLLYEFDGDELKLIYTSDKRDVWDYEWDQNNSNMLALKDKQKILICDGNSILEQSSVN 640 
WD40-rpts                                                                                      

Query      641 GSILLFQNLVVTAVNIEKILLTPENPTKTCIVEVMIKAKQDVMNLVNAMKLEEAIDYAERSPHSELWSMIANYAVFKHAF 720 
WD40-rpts                                                                                      

Query      721 DCAEHAFVKLGDYAGVQLVKKLRNIQSNDLRNAEIYAYRDTLEEAKTAFLQADRRDLAVEMYKKVGDYASVYDLIRNDDD 800 
WD40-rpts                                                                                      

Query      801 DEGKCDAFRNMAETHYEMMEWEEAAKAYSYCGDTANQIDCLIRGNLFGELEVLARTLSDDSEFMEVMGDAFTSRGMCDQA 880 
WD40-rpts                                                                                      

Query      881 VECYLRRSLPQKALHACKELNQWQKAQFIADANHMENVEGLLGKFAVEMRGESDEKSLSALALYMRAGRHLDAAKIAFDI 960 
WD40-rpts                                                                                      

Query      961 AKDRKSKYVPYEELKQCYVLGAVLVENHRQTIKELRKIDKHNFLEDALDDESGLSAEQSRILENTWRGAEAFHFMIMAQQ 1040
WD40-rpts                                                                                      

Query     1041 HFFENRIKDALQTSLILSDYEEFLDPAEVHSMIALAAANVNQFGICSKAMMRLEAFEEFDDAEKEEMRNLSFRLFSENPP 1120
WD40-rpts                                                                                      

Query     1121 VNPNSAKVACSVCDAKIDPYDLQCSECQTKFPVCIASGRLILDNIFWLCPRCKHRAHQHEIPKYNCCPLCHDMESFRVP 1199
WD40-rpts                                                                                     

6 WD40-repeats found in QUERY=C54G7.4 (Len=1199):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-42       4.56  303.06  0.00512       10.0%     52.63
  WD 2:  Seg  5    44-97       5.94  359.97  0.00088       22.5%     48.00
  WD 3:  Seg  8    98-141      4.43  297.48  0.00608       17.5%     49.43
  WD 4:  Seg 19   275-313      3.85  273.89  0.01262       17.5%     30.54
  WD 5:  Seg 23   324-361      4.02  280.66  0.01024       17.5%     55.39
  WD 6:  Seg 30   394-432      3.01  239.20  0.03658       15.0%     34.38

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-42     MSVFR--------------KF----NLGLPEHGQLHFAEWNYNSNYIACGGALGKLKVVK
   WD 2   44-97     GT--DATDLNKSPNAATLVVN----QALEGHNATVMNATWNENNQKLTTSDTSGLIIVWG
   WD 3   98-141    MF--N--------------EQWCEEMINNRNKSVVVSICWNLEGTKIAIAYADGNVIVGT
   WD 4  275-313    -D--P--------------EP----VVVSIPNFKITGAKWSPNGAFLAVCGNDSDKDEPT
   WD 5  324-361    -G--H--------------IV----GYFQTNDSCITGICWESTGLRMAIAA-AGTLLIGQ
   WD 6  394-432    YK--T--------------DE----KTVK-TVTHFENMAFYREHCVLINRQDDGVIPHYF

   WD40 Template    TG--E--------------CL----RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD