Input parameters:

  Query = C54G4.9 (Len=464)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C54G4.9, Len=464):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTNLMSALSKLSQALDSKNIGEVLLALQNFDEEFSAEKCEDVFVRCLQEIISWDLTVSLEISETVVRQMMNRLENQAVLE 80  
WD40-rpts                                                                                      

Query       81 EMCNYIIKQQSSVTVEIAVEIMIEHGWILRTDDCREVWKQIESAKNTEKIEILARRMTANCRILRLSGAPKRFLEKLLKD 160 
WD40-rpts                                                                (_____________________

Query      161 VIISLNANKVNIPMKFLNELAIVSPFHPILVIEDFKKDSEYFYIPHVVSEETRFHLEVKEFTNFFQIESTYHKEQACQML 240 
WD40-rpts      _________WD 1_____________________________)                                     

Query      241 QVFNQIYKRMELIPQLEAPEIDKIVEFWLAALRIFNGYGIGMNDITESAKLLEKTASRYSLKSRPLFLKHFLKKISEKKD 320 
WD40-rpts                                                                                      

Query      321 TNIGLEPQVVATIITTYQRNAFGLRSPEFYEELGEFWALCLKIKYDDVYFATVYFSAVFALAQAQAVFKIKKELCREVYH 400 
WD40-rpts                                                                                      

Query      401 KILQPMHEQLVDFVKLKQVESNKATSEEEVMRLEHQNIGASYFSILTCTYKNAEDRILEFMKEN 464 
WD40-rpts                                                                      

1 WD40-repeats found in QUERY=C54G4.9 (Len=464):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   139-203      3.17  245.72  0.02998       17.5%     25.26

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  139-203    ANCRILRLSGAPKRFLEKLLKDVIISLNANKVNIPMKFLNELAIVSPFHPILVIEDFKKDSEYFY

   WD40 Template    TGECLRTLSGHT----------------SGVTSVS---------FSPDGKRLVSGSEDGTIKVWD