Input parameters:

  Query = C53B4.7c (Len=368)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C53B4.7c, Len=368):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSHEVSTTPAAELAAFRARKVALITGISGQDGSYLAELLLSKGYKVHGIIRRSSSFNTARIEHLYSNPITHHGDSSFSLH 80  
WD40-rpts                                                                                      

Query       81 YGDMTDSSCLIKLISTIEPTEVYHLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIHACRLTEKVRFYQASTSELYGKVQ 160 
WD40-rpts                                                                                      

Query      161 EIPQSEKTPFYPRSPYAVAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGETFVTRKITRSVAKISLGQQESIELGNL 240 
WD40-rpts                                                                          (___________

Query      241 SALRDWGHAREYVEAMWRILQHDSPDDFVIATGKQFSVREFCNLAFAEIGEVLQWEGEGVEEVGKNKDGVIRVKVSPKYY 320 
WD40-rpts      ____________________WD 1_______________________________)                        

Query      321 RPTEVETLLGNAEKAKKTLGWEAKVTVPELVKEMVASDIILMKSNPMA 368 
WD40-rpts                                                      

1 WD40-repeats found in QUERY=C53B4.7c (Len=368):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   229-296      3.20  246.99  0.02884       20.0%      0.29

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  229-296    LGQQESIELGNLSALRDWGHAREYVEAMWRILQHDSPDDFVIATGKQFSVREFCNLAFAEIGEVLQWE

   WD40 Template    TGECLRTLSGHTSGVTSVSF---------------SPDGKRLVSGSEDG-------------TIKVWD