Input parameters:

  Query = C50F7.9 (Len=298)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C50F7.9, Len=298):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKSIRFNNPLFFIVLVFVIQLSLIIFRVVFIGKPASSVRAARECLHIQTNTAETDDQFFGRMWPSLHQVVDKCSYRHFRD 80  
WD40-rpts            (__________________________________________WD 1___________________________

Query       81 RVKVFGSSKQYILWLNWLVDNNEHMCNSIFIHNSKSIAMEREFKRYNRKCVIYSLSDKHTETSHYQDPRYSVLTLKQNVS 160 
WD40-rpts      _______________)                                                                

Query      161 SQARHLGWGVDHYARDSNAVDLTYFTVVQVHKLRYDSVNIFYDGSQHIKALFTKSAFDEANLVSCQFNILYDRPKGRLAR 240 
WD40-rpts                                                                                      

Query      241 REFRATWKKLLYDRRYFVASVRRISGSNDKISILLLNICDPYCWAKYISNQPFLAKNV 298 
WD40-rpts                                                                

1 WD40-repeats found in QUERY=C50F7.9 (Len=298):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     7-96       2.88  233.75  0.04318       17.5%     25.65

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-96     NNPLFFIVLVFVIQLSLIIFRVVFIGKPASSVRAARECLHIQTNTAETDDQFFGRMWPSLHQVVDKCSYRHFRDRVKVFGSSKQYILWLN

   WD40 Template    TGECLRT----------------LSGHTSG-----------VTSVSFS---------P---------D-----GKRLVSGSEDGTIKVWD