Input parameters:

  Query = C49C3.6 (Len=220)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C49C3.6, Len=220):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPLSKRRAAGRINGLKGPPAKKRKEIERHEALLMHPLAYTAEQYEQVAEESKFYKNCFETTAAENVELLKSNDQLKKELE 80  
WD40-rpts      (_______________________________________________________________________________

Query       81 LLKNQQGNQLKVDMKFKSQIESTRQSNMTLLREREIWQNRYYDVLAEKLALSARVKSMMGDIVESVEVPNDSNGNTWELR 160 
WD40-rpts      _____WD 1_______________________________________________________________________

Query      161 EDLEIDRSARRKTEEEPKAQKMNSTRGSLPRNQCSTRSNNQTPNEMLLKMAIGLDTTSVN 220 
WD40-rpts      _____________)                                              

1 WD40-repeats found in QUERY=C49C3.6 (Len=220):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-174      3.25  248.82  0.02727       17.5%     11.81

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-174    MPLSKRRAAGRINGLKGPPAKKRKEIERHEALLMHPLAYTAEQYEQVAEESKFYKNCFETTAAENVELLKSNDQLKKELELLKNQQGNQLKVDMKFKSQIESTRQSNMTLLREREIWQNRYYDVLAEKLALSARVKSMMGDIVESVEVPNDSNGNTWELREDLEIDRSARRKTE

   WD40 Template    TGECL-----------RTLS-----------------GHT----------------------------------------------SGVTSVSF-----------SP---------------------------------DGKRLVSGSEDGTIKVW----------------D