Input parameters:

  Query = C48B6.8 (Len=782)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C48B6.8, Len=782):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLFRLVEWVSQTIPNTSTILNASFFQDREQLVIGGENGQITISDPGFRDTNAHVLCTTETKYAILQMASDNFLPSMNNI 80  
WD40-rpts           (_________________WD 1_________________)                                   

Query       81 LAVLSPTKLTYYKVHFGKLCIYSAVIYHTEWLIIMTNRSSPDETLASLDEIFSHSFSTSAWNMCVIPIEESTPQILVQSI 160 
WD40-rpts                                                                                      

Query      161 DCKLSLFQGDQCVFSMVPLRALQPGPIGYCQTTQTLFVANNGFLAAIKFSLMSSGSQKKINYDWSFNLGDTAIQMKVTEG 240 
WD40-rpts                                                                                      

Query      241 SKPTTIVLCRRHVSAFNATGSVVWQIRLEAVGMAMCLYRSLLINNKLVWNCNAQMSPVALLVCSYNKSYENTITMMAPDG 320 
WD40-rpts                                                                                      

Query      321 KVVVGYLGTEPNLYRLPEDKVIVNYAERMEEYKRMEQKIKESDAAGGAIKRKEGIQMKLSIGEIGKRTIEPNAASNAPYC 400 
WD40-rpts                                                                                      

Query      401 NLIVEFSEVQNVSKLHINILSECASPSKQVILNVGTSKSTASIEIPFYVGSKKSPTSNKVTIAAHCAFTQLTVTKSIDLP 480 
WD40-rpts                                                                                      

Query      481 FKVLFEESQIDRNAKYKVTIDTAGSVMPLNKLFSEFESENPQAIGFSLHGSDKTVSVFAANKSNRYRIQSEHISLLQITS 560 
WD40-rpts                                                                                      

Query      561 RELVKRIAESAPGIEIGGVIPFEYMRETLDEIQELQTKKKEDSKKIDCRTKEVRAIEALSLNSCKTGNMGNLPSLDALFD 640 
WD40-rpts                                                                                      

Query      641 KSYRELLDAMDSYNSLTAKIENQKASLNSLFQLAADLSKLSKVDTILNGSFWANTQQSLRDRLRWAVKTDRGNEMTMIEK 720 
WD40-rpts                                                                                      

Query      721 LCEHSPKELPKIREEEEEEEQQISIFIVFLLNMNSFSCRLQALHFAARPAFLNEISKAFVSL 782 
WD40-rpts                                                                    

1 WD40-repeats found in QUERY=C48B6.8 (Len=782):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-45       2.95  236.72  0.03945       32.5%     25.25

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-45     LVEWVSQTIPNTSTILNASFFQDREQLVIGGENGQITISD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD