Input parameters:

  Query = C47E12.8 (Len=520)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C47E12.8, Len=520):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLLIKNGTIVNDDAIFKSDVLVLDGRIVEIAPSIQPTPGLEVVDATDRLVIPGGIDPHTHMQLPFMGEIAKDDFHRGTE 80  
WD40-rpts                                                                                      

Query       81 AAVAGGTTMIIDFVIPTKGESLLVAYDRWRGWADPKVVCDYGLSMAITSWGPEIAKEMEIVTGAEYGINSFKFFLAYAGV 160 
WD40-rpts                                                                                      

Query      161 FMVRDEEFYQGMIQCAKLRALARVHAENGSVIAERCEHLLSSGITGPEGHTQSRPEELEAEATFRACTMASQANCPLYVV 240 
WD40-rpts                                                                                      

Query      241 HVMSKGAAAAIAHHRKKGAVVFGEPIAAGLATDGSHYYNEDWLHAARYVMSPPLSRDPSTPSALMKLLAAGELHLTATDN 320 
WD40-rpts                                                                           (__________

Query      321 CTFDCQQKSLGKDDFTKIPNGVNGVEDRMSVVWDKGVHAGIIDPMRFVAVTSTMAAKIFNCYPQKGRIAVGSDADIVIWN 400 
WD40-rpts      _________________________________WD 1__________________________________________)

Query      401 ANATRTISKDTHHHAIDFNIFEGMQVHGVPEITISRGRTVWANGQLKTVQGSGQFIPLAPDSQIVFSAVDNRKKAMEPVK 480 
WD40-rpts                                                                                      

Query      481 IDRIPYEPSALQTPDANANIVVKAPVRAAIPPGGASSIQF 520 
WD40-rpts                                              

1 WD40-repeats found in QUERY=C47E12.8 (Len=520):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   310-400      4.18  287.29  0.00834       20.0%      8.91

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  310-400    AGELHLTATDNCTFDCQQKSLGKDDFTKIPNGVNGVEDRMSVVWDKGVHAGIIDPMRFVAVTSTMAAKIFNCYPQKGRIAVGSDADIVIWN

   WD40 Template    TGECLRTLSGHTSGV--------TSVSFSPDGKR-----------------LVS--------------------------GSEDGTIKVWD