Input parameters:

  Query = C44F1.1 (Len=743)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C44F1.1, Len=743):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGMTSMTSTNKRKACVIDNLLEAKRTHNLAQMRQELASLCDKKSEFLRAQKRASLFVDSRRIGAPSIMNEFSVIFKKACE 80  
WD40-rpts                                                                                      

Query       81 LPLEDAEEQRLLIEDIIKESIVIEWPRIFPGVHPDQPESELDFAPLIHRARNVVKCRTSHPTMRVKIFAISEMNELASPQ 160 
WD40-rpts                                                       (_____________________________W

Query      161 VVETFYRASLVKLCGDNPDAKLRQIAGKMILTQREGIAATKSAEQSGAVVNSEGKLLCSQSSSNAQILLFANQLNEPSVR 240 
WD40-rpts      D 1_____________________________)                                               

Query      241 TTSLKYDYGFLCATFPEMGVTLNSMVDRRQLATRYAIQLEVHLNIDNKIIVVHSLITHPFLIAITNDQTEPLLQSIFWNR 320 
WD40-rpts                                                                                      

Query      321 LLNCDQHDASDYFPDKNQLPWGVLCQALRAFIKSQIPQARFLTDYELKHVQAMLLLPRILRCGSRNELQLLEISLFGSVE 400 
WD40-rpts                                                                                      

Query      401 NQQRDLHEEMKRLRNRLLREPVMDSFPVERKEFITEKSISILDMSTELGHTTWQWLHRACEMIQDVGHKLCPSPACEKKS 480 
WD40-rpts                                                                                      

Query      481 SKTKKQMAASEDYQTVISLFNKGFLTFCSTQKTESCFNYVEKNSSMLMRFCDENIGHFSICYGIENGKPKIGSISAEQVK 560 
WD40-rpts                                                                                      

Query      561 DFKQGLPEMLIDEHYPSKYHSLIRMSMEDEDDGSPAVSVQKREIFNNYKTERRSVESVSIMDDETNRVDVLSGALLARQS 640 
WD40-rpts                                                                                      

Query      641 PSPQNLNPFVPNIDIAAFTNNNSQLTQSIFPLLHSLSSNLDISTLLKSFTSPPTNEEDHEMSDTSGDDPPTSSIASLLQS 720 
WD40-rpts                                                                                      

Query      721 TEVHGEDVNDTGNIAQLLLKNYQ 743 
WD40-rpts                             

1 WD40-repeats found in QUERY=C44F1.1 (Len=743):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   130-193      2.99  238.28  0.03763       12.5%     21.63

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  130-193    ARNVVKCRTSHPTMRVKIFAISEMNELASPQVVETFYRASLVKLCGDNPDAKLRQIAGKMILTQ

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVS-----------------GSED-------GTIKVWD