Input parameters:

  Query = C44E4.2 (Len=333)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C44E4.2, Len=333):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDPRETAIGLVRYVTENAAKDFDGESIAAIIYRLRVVENYVSSDVDIICEAMRILIKKLVNLPPITFSPDVWMPIMTSIT 80  
WD40-rpts      (_______________________________________________________________________________

Query       81 EGAIEPQWRIMMESIDISKFSSTSSNFVHMDSITASSTKCSEQITSICKGFALEFGLTRRLFSAIWNTDLEETARKMMNQ 160 
WD40-rpts      ___WD 1_________________________________________________________________________

Query      161 EWDSVKIDSSPDSAKQAAGLIEKSIFDLFSEMKDHETFANELYYAALARILKRLQENKKPAIQDSEDISFYESSLHIYDE 240 
WD40-rpts      ________)                                                                       

Query      241 LIKKLWPHLSKKDPNVKKNTLIIFEKLISLSPTDVLVQRITEKFIDSCEWLKISGEEICTSMEPRLWKIVGSLVSRILDL 320 
WD40-rpts                                                                                      

Query      321 KKTIPYEIGKFFF 333 
WD40-rpts                   

1 WD40-repeats found in QUERY=C44E4.2 (Len=333):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-169      3.80  271.73  0.01348       20.0%      2.35

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-169    MDPRETAIGLVRYVTENAAKDFDGESIAAIIYRLRVVENYVSSDVDIICEAMRILIKKLVNLPPITFSPDVWMPIMTSITEGAIEPQWRIMMESIDISKFSSTSSNFVHMDSITASSTKCSEQITSICKGFALEFGLTRRLFSAIWNTDLEETARKMMNQEWDSVKIDS

   WD40 Template    TGECL--------------RTLSG-----------------HTS----------------GVTSVSFSPDG--------------------------------------------KRLVS---------------G----------SED-------------GTIKVWD