Input parameters:

  Query = C44C1.3 (Len=191)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C44C1.3, Len=191):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGKGNSKLKSSQIRDLAEQTYFTEKEIKQWYKGFVRDCPNGMLTEAGFQKIYKQFFPQGDPSDFASFVFKVFDENKDGAI 80  
WD40-rpts      (_________________________________________________________________WD 1__________

Query       81 EFHEFIRALSITSRGNLDEKLHWAFKLYDLDQDGFITRNEMLSIVDSIYKMVGSSVQLPEEENTPEKRVDRIFRMMDKNN 160 
WD40-rpts      ______________________________________________________)                         

Query      161 DAQLTLEEFKEGAKADPSIVHALSLYEGLSS 191 
WD40-rpts                                     

1 WD40-repeats found in QUERY=C44C1.3 (Len=191):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-135      3.04  240.32  0.03536       25.0%     -13.01

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-135    MGKGNSKLKSSQIRDLAEQTYFTEKEIKQWYKGFVRDCPNGMLTEAGFQKIYKQFFPQGDPSDFASFVFKVFDENKDGAIEFHEFIRALSITSRGNLDEKLHWAFKLYDLDQDGFITRNEMLSIVDSIYKMVGSS

   WD40 Template    TGECLRTLS-----------GHT----------------SGVTS----------------VS---------FSPDGKRLVS-------------GS---------------EDGTIK---------------VWD