Input parameters:

  Query = C43H6.4 (Len=627)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C43H6.4, Len=627):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNRELGFTCFESLIKSPSTNKEDIRKALQILANGFSEETIRYILGSLLQDYINESTMCYWKKALVKLIPEDSFNEYRADL 80  
WD40-rpts                                                                                      

Query       81 IFNAPPVLWTKLGAAAGKHITGIVMEKDEECYETAINKFGDIVLEIARDIRINNRWRIQDVKDSLQCLKYLICELRPQLP 160 
WD40-rpts                                                                                      

Query      161 PLANAELNSCFLSLAKNVRLGRENFFLLISLIIVTENFSYQMLEALTYHVSKRWLNLGTAVEFLNIKRNATTIEELGNFK 240 
WD40-rpts                                                                                      

Query      241 EMDIDRIETNFVVAMLQNRNAYEIQYFMSQLQLNNSVSDEILADSAHRHLIELDMTRQKNPTNHGLIFFSRQSVLIKYFP 320 
WD40-rpts                                                                (_____________________

Query      321 NYRQNVFDELMKFAVLEPMMDEKQRCVYYTCLAAVCPKKEQHHQNSNPELFKLLFKRLMKFLPDVHAEGIDQVFGPFEMV 400 
WD40-rpts      _______________________WD 1___________________________________________)         

Query      401 LHCLYNLYQIDTKLKAVMTEIDPDWQEKIAKEIDFHIVANANNVYNWGRFSRHFNHHERQRYQREQYIIVNTGKLLVYML 480 
WD40-rpts                                                                                      

Query      481 GVINNDVLQVEPSFMSPLNIFKGYKLTDGFKNSFPIFMTKTLSRPGGRVPLLHRITMNYDRIFGNNQNVETEITRHLRHY 560 
WD40-rpts                                                                                      

Query      561 WPIFQLNNNNDQERIHLEEQMRHVQIDRLTDADSFGVPYFVESEYPYESDDSSDEDEEEVISPVSAA 627 
WD40-rpts                                                                         

1 WD40-repeats found in QUERY=C43H6.4 (Len=627):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   299-391      3.01  238.92  0.03689       10.0%      2.28

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  299-391    KNPTNHGLIFFSRQSVLIKYFPNYRQNVFDELMKFAVLEPMMDEKQRCVYYTCLAAVCPKKEQHHQNSNPELFKLLFKRLMKFLPDVHAEGID

   WD40 Template    TGECLRTLSGHTS------GVT---------------SVSF----------------SPDGKRLVSGSE--------------DGTIK--VWD