Input parameters:

  Query = C36B1.5 (Len=496)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C36B1.5, Len=496):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAENGNFAVPAPPRQFGSLANAESVNAILNAQQQNHGPTVSLERMEVSNQADSRHDAEMFAEFDRRRRARTLTLPTDDVQ 80  
WD40-rpts                                                                                      

Query       81 VKLKLRALNQPICLFGEDALDRRERLRALLSTMSEDEIAAVLHTDEVNADKADEETVTWYHRGPIELRMARVSIADFSLR 160 
WD40-rpts             (___________________________________________________WD 1_________________

Query      161 KAKLRLDKAREEAARPAHEKALARQEAHKWVQQINLHASQVADTRPVAFCEFSADSEHIVTAGWSGSVAVWKREQCAQEI 240 
WD40-rpts      __________________________________)(________________WD 2_______________)   (____

Query      241 KFIGHSSQAGCARFHPGAFTQNDYSSLNVVSCSYDGTVLLWSLSQESPIGELEQHPQRVSKVAFHPNGHHLATACFDSTW 320 
WD40-rpts      _________________WD 3____________________)   (_________________WD 4_____________

Query      321 RMYDLTTKKELLYQEGHSKSVADVAFHPDGSVALTGGHDCYGRVWDMRTGRCIMFLDGHTKEIHSVEWMPNGYEMITGSS 400 
WD40-rpts      ___)   (_________________WD 5________________)   (_________________WD 6_________

Query      401 DNSMKVWDLRMRRNTYTMPAHTSVVTRVRADAAGQYLVSASFDCTLKMWSTTGWQPLRQLQGHDTRILCVDISPDGQWMC 480 
WD40-rpts      _______)   (_________________WD 7________________)   (_________________WD 8_____

Query      481 SSAFDRTFKLWAQSDY 496 
WD40-rpts      ___________)    

8 WD40-repeats found in QUERY=C36B1.5 (Len=496):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    88-195      2.90  234.56  0.04213        7.5%     22.05
  WD 2:  Seg  5   196-232      7.76  435.30  8.5e-05       22.5%     52.11
  WD 3:  Seg  9   236-282      7.25  413.94  0.00016       30.0%     55.57
  WD 4:  Seg 13   286-324      9.19  494.34  1.4e-05       27.5%     52.71
  WD 5:  Seg 17   328-366      9.63  512.29  7.7e-06       35.0%     54.62
  WD 6:  Seg 21   370-408     10.81  561.27  1.7e-06       42.5%     53.91
  WD 7:  Seg 25   412-450      9.41  503.16  1.0e-05       40.0%     55.57
  WD 8:  Seg 29   454-492      9.89  523.13  5.5e-06       37.5%     54.42

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   88-195    LNQPICLFGEDALDRRERLRALLSTMSEDEIAAVLHTDEVNADKADEETVTWYHRGPIELRMARVSIADFSLRKAKLRLDKAREEAARPAHE--------KALARQEAHKWVQQIN
   WD 2  196-232    ---LHASQVADT--------------R-------------------------PVAFC-----------------------------EFSADS--------EHIVTAGWSGSVAVWK
   WD 3  236-282    -CAQEIKFIGHS--------------S-------------------------QAGCA-----------------------------RFHPGAFTQNDYSSLNVVSCSYDGTVLLWS
   WD 4  286-324    -ESPIGELEQHP--------------Q-------------------------RVSKV-----------------------------AFHPNG--------HHLATACFDSTWRMYD
   WD 5  328-366    -KKELLYQEGHS--------------K-------------------------SVADV-----------------------------AFHPDG--------SVALTGGHDCYGRVWD
   WD 6  370-408    -GRCIMFLDGHT--------------K-------------------------EIHSV-----------------------------EWMPNG--------YEMITGSSDNSMKVWD
   WD 7  412-450    -RRNTYTMPAHT--------------S-------------------------VVTRV-----------------------------RADAAG--------QYLVSASFDCTLKMWS
   WD 8  454-492    -WQPLRQLQGHD--------------T-------------------------RILCV-----------------------------DISPDG--------QWMCSSAFDRTFKLWA

   WD40 Template    TGECLRTLSGHT--------------S-------------------------GVTSV-----------------------------SFSPDG--------KRLVSGSEDGTIKVWD