Input parameters:

  Query = C33H5.6 (Len=248)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C33H5.6, Len=248):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYNDEELITVQPEAFKALTPSKKFNETSNKLLDLAYSDDGNNLIVSAEDVVLVYDLRDGSKGKSIECKKYGVNCLEYLDT 80  
WD40-rpts                       (________________WD 1________________)   (_________________WD 2

Query       81 VKCVHSGPNDTTIRLLHLQKKSYVRYFDGHRMPVNFIRTNPKDREKFLSSSVDGEIRMFDTRTFENYGCLLAGHTPLIAF 160 
WD40-rpts      ________________)   (_________________WD 3_________________)(_________________WD

Query      161 DPDGILFAVATKSDTIKLFDMRSFDLGPFQSFIITKTDNDEWSDIEFSPCGKFILISTTAGSVKWIDAFDGTLIHSFSQH 240 
WD40-rpts       4_________________)        (_________________WD 5________________)             

Query      241 KNPNVSFF 248 
WD40-rpts              

5 WD40-repeats found in QUERY=C33H5.6 (Len=248):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    18-55       7.58  427.82  0.00011       20.0%     53.18
  WD 2:  Seg  6    59-97       9.04  487.97  1.6e-05       22.5%     52.24
  WD 3:  Seg 10   101-140      8.67  472.84  2.6e-05       30.0%     53.72
  WD 4:  Seg 14   141-180      7.81  437.39  7.9e-05       22.5%     50.08
  WD 5:  Seg 18   189-227      8.19  453.00  4.9e-05       20.0%     57.93

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   18-55     -LTPSKKFNETSNKLLDLAYSD-DGNNLIVSAED-VVLVYD
   WD 2   59-97     -GSKGKSIECKKYGVNCLEYLD-TVKCVHSGPNDTTIRLLH
   WD 3  101-140    -KSYVRYFDGHRMPVNFIRTNPKDREKFLSSSVDGEIRMFD
   WD 4  141-180    TRTFENYGCLLAGHTPLIAFDP-DGILFAVATKSDTIKLFD
   WD 5  189-227    -FQSFIITKTDNDEWSDIEFSP-CGKFILISTTAGSVKWID

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD