Input parameters:

  Query = C27A7.4 (Len=1437)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C27A7.4, Len=1437):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKPFLIEWAPHCGWICVVTQDETTGEANVAFSDHSGSVQEKGPSKPGSVSCVRWHPKKQFVVVGWKDGGVCFIPKGGNVS 80  
WD40-rpts                                           (________________WD 1_______________)(_____

Query       81 HTVVETYPFPNQGVDWSHDGTVLMTLHNPSSVHLYSYMVIGEEISTSNIMQIELNDQITLWCKRLSYDKFKPSKISVTDD 160 
WD40-rpts      _____________WD 2__________________)                                            

Query      161 DSGVDESPFGSKESLAERRDEKSTVPKGTEFLFAGKSGTIYGVDNDRQRTIHKLDSEILFMGYCETISIIIVFTRDCFIF 240 
WD40-rpts           (_________________WD 3________________)(_________________WD 4______________

Query      241 HLAKGTSEMRCAERVKVKLGGKSEKYSLELDDGILVMCYGEKEIRVWDLIKEENGTIALDVNKGFQPDETINVVTVNGKR 320 
WD40-rpts      __)(____________________WD 5___________________)          (________________WD 6_

Query      321 GVITAATSLNNIAEWKRKRTDTNVESAWNLSPSTHVDSQVSLIRWSPILSTAALITEEDLVLIGENSLTVKMRGKMAAIQ 400 
WD40-rpts      _______________)          (_________________WD 7________________)               

Query      401 TSSNSFTLLHATSGVSQDLKLSIPSAKGICLGEKQLVVWNEDTVVTYDVQTSLATIQCTSFSCNTTSVAIVNQNLYCIEK 480 
WD40-rpts                                                                                      

Query      481 DKIFARTLQGTLRQEISLPEIEGDPEILEVNRCWMAVATTNGFIRIYNLSAKDAQQEHNSKYIIENVKNFYKFHTIRINH 560 
WD40-rpts                (________________WD 8________________)                                

Query      561 TGNKVAVSYLEDVSTVAERLLVYDAELDAVSYFSFDRGMTDTQEYETQAELAHTSSGRPVTAAARKMAREQSRFQMMNHR 640 
WD40-rpts                                                                                      

Query      641 PGAFEWDENDARYLVVECIHVEPESTDQRVLTAFVTSEHGIQLQGMQQKNLHCGKLVSVSVPNFYFVRKSGWDEEDNRDE 720 
WD40-rpts                                                                                      

Query      721 RTIGKTLVAKCLREFLGNENCDESTRKAMMDFSFYLTIGSMDAAFKAIQFIKSDSVWDHMASMSIKTRRLDVAMVCLGHM 800 
WD40-rpts                                                                                      

Query      801 KNVRGARAVRRSQQNGENDSMKCAALAIELSMLEEALIIYAQNERYDLMNKLYQSQNMWSSAFEIAETKDRIHLRNTHYN 880 
WD40-rpts                                                                                      

Query      881 YAKYLEARRDQASIEAAIENYEKAGVHAFEVFRMLKDYPKQIEQYVRRKREESLYSWWGAYLESVGELEGAISFYSSAKD 960 
WD40-rpts                                                                                      

Query      961 YYCMVRVKCIQGKTDEAARLAEESKDKAACYLIGRMYENDGDVVKAVKFFTKARALSSAIRLAKEHDMKDRLANLCLMAG 1040
WD40-rpts                                                                                      

Query     1041 GSELVSAARYYEDLPGYAHKAVMLYHKAGMIGRALDLAFRTEQFSALDLITKDLDAGTDPKILRRAAEFFENNQNYEKAV 1120
WD40-rpts                                                                                      

Query     1121 NFLCLAKEFSGAVQLCKNRNVRVSDKFAELMTPTKDDMPNVQERKQVLETVAELCLQQGAYSAAAKKFTQAGDKLSAMRA 1200
WD40-rpts                                                                                      

Query     1201 LLKSGDIQKIRFFANTARNKEIYILAANFLQTTDWQDNQQTMKDIETFYTKSQSFEHLGNFYKSVAIIEAEHLRTLDKSM 1280
WD40-rpts                                                                                      

Query     1281 GALEMAAVCVLEAEQKNMSTTGLDALKEDLKKYVVQLRKLQSVLEVMKNDAADGMRQLTTLAEESIDDDIVPCTRLFALI 1360
WD40-rpts                                                                                      

Query     1361 IEDHASRKNWKPAYRAITGLQKKVPNVDLETFVETSTLDKVCDEMRMERVTKKKKEEVESDGEEVDFSHSLRRQNVS 1437
WD40-rpts                                                                                   

8 WD40-repeats found in QUERY=C27A7.4 (Len=1437):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    38-74       5.24  331.03  0.00215       17.5%     46.92
  WD 2:  Seg  7    75-116      5.52  342.52  0.00151       15.0%     54.43
  WD 3:  Seg 15   166-204      3.94  277.30  0.01135       17.5%     19.54
  WD 4:  Seg 17   205-243      4.11  284.58  0.00907       12.5%     48.02
  WD 5:  Seg 21   244-288      3.32  251.93  0.02479       25.0%     46.69
  WD 6:  Seg 26   299-336      3.73  268.67  0.01482        7.5%     43.67
  WD 7:  Seg 29   347-385      3.36  253.61  0.02354       15.0%     40.13
  WD 8:  Seg 41   491-528      3.58  262.50  0.01792       10.0%     42.47

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   38-74     ----------VQEKGPSKPGSVSCVRWHPKKQFVVVGWKDGGVCFIP
   WD 2   75-116    KGGNV-----SHTVVETYPFPNQGVDWSHDGTVLMTLHNPSSVHLYS
   WD 3  166-204    -E--S-----PFGSKESLAERRDEKSTVPKGTEFLFAGKSGTIYGVD
   WD 4  205-243    -N--D-----RQRTIHKLDSEILFMGYCETISIIIVFTRDCFIFHLA
   WD 5  244-288    KG--TSEMRCAERVKVKLGGKSEKYSLELDDGILVMCYGEKEIRVWD
   WD 6  299-336    LD---------VNKGFQPDETINVVTVNGKRGVITAATSLNNIAEWK
   WD 7  347-385    -A--W-----NLSPSTHVDSQVSLIRWSPILSTAALITEEDLVLIGE
   WD 8  491-528    T---------LRQEISLPEIEGDPEILEVNRCWMAVATTNGFIRIYN

   WD40 Template    TG--E-----CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD