Input parameters:

  Query = C17H12.1 (Len=643)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C17H12.1, Len=643):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSELRKLELERKKQKLAELKSQRKREEDARVQNLLRSTNENGTTQNGTSRQTLSSNEVEDILRQVGISTEPTVREESPAP 80  
WD40-rpts                                                                                      

Query       81 PPGSHSDNHVDPSASHPRISNLLSVDLEFSSVQTACTDNKDSAIYSKGTQTDDERISVGEFSLGSQEFDYDDDMIMPMDH 160 
WD40-rpts                                                                                      

Query      161 GQFRGRAHSHDQDSPLPYNEEIAKLLGQTKQGDKGLTRQETEEKKTQTVQIVPPLSDEEKYRLTLDPEFLDSFNRSCKVI 240 
WD40-rpts                                                                                      

Query      241 SRALNEEIDICINYTKDPYEKAIASDDLLHLAQVYQDETWTAKRLVTGMAFSEHYPDLLAVSYGPCDIPNEPPGVIVVWN 320 
WD40-rpts          (_____________WD 1_____________)(___________________WD 2___________________)

Query      321 TKSKRMTAEFIVYCQSEIQSVAFARFHAHLLLAGCESGQICVWDNRLTSRKLPINRSPLTTQAHTYTVSCLAVVGTKNAH 400 
WD40-rpts         (__________________WD 3_________________)          (__________________WD 4___

Query      401 NFVSLSRDGRICSWNVDNLTQPVDGKELMTKEGKAASATRMSFPIGEMQTFVVGTDTGEILAASRNGADPAVIKTDVCYK 480 
WD40-rpts      ______________)         (_________________WD 5_________________)        (_______

Query      481 GHSGTLTGIEFHRASGVVDFSHLFISSSHDWTVKLWSTKDANLKFSFESHPDLVLDVAWSPVHPAVFASIDADGNIFVWN 560 
WD40-rpts      _____________WD 6___________________)   (_________________WD 7_________________)

Query      561 LNEDVEGPVARLRAGAEGESVYMNRLIWSPDGKHVFVGDDEGRVHMYDVRESLYVLKSEEWNRFARVLSDMKQSNEEAEN 640 
WD40-rpts               (_________________WD 8________________)                                

Query      641 YNM 643 
WD40-rpts         

8 WD40-repeats found in QUERY=C17H12.1 (Len=643):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   245-276      4.11  284.37  0.00913       10.0%     27.25
  WD 2:  Seg  5   277-320      3.93  277.20  0.01139       22.5%     28.17
  WD 3:  Seg  8   324-364      5.89  357.95  0.00093       30.0%     51.67
  WD 4:  Seg 12   375-415      6.50  383.14  0.00043       27.5%     46.74
  WD 5:  Seg 15   425-464      5.90  358.41  0.00092       27.5%     53.30
  WD 6:  Seg 19   473-517      6.73  392.51  0.00032       25.0%     48.13
  WD 7:  Seg 23   521-560      6.94  401.34  0.00024       27.5%     53.18
  WD 8:  Seg 27   570-608      7.57  427.47  0.00011       22.5%     51.85

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  245-276    ---------------NEEI-DICINYTK--DP-YE------KAIASDDLLHLAQVYQ
   WD 2  277-320    DETWTAKRLVTGMAFSEHY-PDLLAVSY--GP-CD---------IPNEPPGVIVVWN
   WD 3  324-364    -KRMTA-------EFIVYCQSEIQSVAF--ARFHA------HLLLAGCESGQICVWD
   WD 4  375-415    -NRSPL-------TTQAHT-YTVSCLAVVGTK-NA------HNFVSLSRDGRICSWN
   WD 5  425-464    -GKELM-------TKEGKA-ASATRMSF--PIGEM------QTFVVGTDTGEILAAS
   WD 6  473-517    -IKTDV-------CYKGHS-GTLTGIEF--HR-ASGVVDFSHLFISSSHDWTVKLWS
   WD 7  521-560    -ANLKF-------SFESHP-DLVLDVAW--SPVHP------AVFASIDADGNIFVWN
   WD 8  570-608    -ARLRA-------GAEGES-VYMNRLIW--SP-DG------KHVFVGDDEGRVHMYD

   WD40 Template    TGECLR-------TLSGHT-SGVTSVSF--SP-DG------KRLVSGSEDGTIKVWD