Input parameters:

  Query = AT5G67320.1 (Len=613)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G67320.1, Len=613):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLTSVELNFLVFRYLQESGFTHAAFTLGYEAGINKSNIDGNMVPPGALIKFVQKGLQYMEMEANLSNSEVDIDEDFSF 80  
WD40-rpts                                                                                      

Query       81 FQPLDLISKDVKELQDMLREKKRKERDMEKERDRSKENDKGVEREHEGDRNRAKEKDRHEKQKEREREREKLEREKERER 160 
WD40-rpts                                                                                      

Query      161 EKIEREKEREREKMEREIFEREKDRLKLEKEREIEREREREKIEREKSHEKQLGDADREMVIDQTDKEIAGDGSTGAEPM 240 
WD40-rpts                                                        (_______________WD 1__________

Query      241 DIVMTPTSQTSHIPNSDVRILEGHTSEVCACAWSPSASLLASGSGDATARIWSIPEGSFKAVHTGRNINALILKHAKGKS 320 
WD40-rpts      _____)        (_________________WD 2________________)   (_______________________

Query      321 NEKSKDVTTLDWNGEGTLLATGSCDGQARIWTLNGELISTLSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWDVKAEEWK 400 
WD40-rpts      __WD 3_________________________)  (_________________WD 4________________)   (___

Query      401 QQFEFHSGPTLDVDWRNNVSFATSSTDSMIYLCKIGETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQS 480 
WD40-rpts      _____________WD 5________________)   (_________________WD 6________________)   (

Query      481 TFVHDLREHTKEIYTIRWSPTGPGTNNPNKQLTLASASFDSTVKLWDAELGKMLCSFNGHREPVYSLAFSPNGEYIASGS 560 
WD40-rpts      _____________________WD 7_____________________)   (_________________WD 8________

Query      561 LDKSIHIWSIKEGKIVKTYTGNGGIFEVCWNKEGNKIAACFADNSVCVLDFRM 613 
WD40-rpts      ________)   (________________WD 9________________)   

9 WD40-repeats found in QUERY=AT5G67320.1 (Len=613):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   211-246      3.91  276.05  0.01180       15.0%      1.13
  WD 2:  Seg  5   255-293      9.79  519.26  6.2e-06       40.0%     49.32
  WD 3:  Seg  9   297-352      8.58  469.10  3.0e-05       27.5%     52.12
  WD 4:  Seg 13   355-393     10.08  531.25  4.3e-06       40.0%     52.05
  WD 5:  Seg 17   397-434      6.87  398.54  0.00026       15.0%     50.43
  WD 6:  Seg 21   438-476      9.88  522.76  5.6e-06       35.0%     54.91
  WD 7:  Seg 25   480-527      8.16  451.84  5.1e-05       35.0%     54.03
  WD 8:  Seg 29   531-569     10.35  542.13  3.1e-06       40.0%     53.55
  WD 9:  Seg 33   573-610      7.66  431.27  9.6e-05       22.5%     55.48

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  211-246    KQLGDADREMVI-----------------DQTDKEIAGDG------------STGAEPMDIVMTP
   WD 2  255-293    NSDVRILEGHTS-----------------EVCACAWSPSAS---------LLASGSGDATARIWS
   WD 3  297-352    GSFKAVHTGRNINALILKHAKGKSNEKSKDVTTLDWNGEGT---------LLATGSCDGQARIWT
   WD 4  355-393    GELISTLSKHKG-----------------PIFSLKWNKKGD---------YLLTGSVDRTAVVWD
   WD 5  397-434    EEWKQQFEFHSG-----------------PTLDVDWRNNVS----------FATSSTDSMIYLCK
   WD 6  438-476    TRPAKTFTGHQG-----------------EVNCVKWDPTGS---------LLASCSDDSTAKIWN
   WD 7  480-527    STFVHDLREHTK-----------------EIYTIRWSPTGPGTNNPNKQLTLASASFDSTVKLWD
   WD 8  531-569    GKMLCSFNGHRE-----------------PVYSLAFSPNGE---------YIASGSLDKSIHIWS
   WD 9  573-610    GKIVKTYTGN-G-----------------GIFEVCWNKEGN---------KIAACFADNSVCVLD

   WD40 Template    GECLRTLSGHTS-----------------GVTSVSFSPDGK---------RLVSGSEDGTIKVWD