Input parameters:

  Query = AT5G66240.3 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G66240.3, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVEREDRVSLELSEEIIQSMEPGAVFRDYNCRISSIDFHKTSTCMVTASDDDSIRLYDVASATCLKTINSKKYGVDLVCF 80  
WD40-rpts                         (_________________WD 1________________)   (__________________

Query       81 TSHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVVSLSLCSGGECFISGSLDRTVLLWDQRVEKCQGLLRVQGR 160 
WD40-rpts      WD 2__________________)   (_________________WD 3________________)   (___________

Query      161 PAAAYDDQGLIFAIAFGGYIRMFDARMYEKGPFEIFSVGGDLSEANVVKFSNDGRLMLLTTMDGFIHVLDSFRGTLLSTF 240 
WD40-rpts      ____WD 4_______________)       (_________________WD 5________________)   (______

Query      241 SVKPVAGESTLDAAFSPEGMFVVSGDGSTHAWGVRSGKQVHSWMGLGSEPPVIKWGPGSPMFVTGSSELAFVIPDLSKLP 320 
WD40-rpts      ___________WD 6_________________)   (_________________WD 7________________)     

Query      321 AYAIRK 326 
WD40-rpts            

7 WD40-repeats found in QUERY=AT5G66240.3 (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    20-58       9.15  492.61  1.4e-05       20.0%     52.96
  WD 2:  Seg  6    62-103      7.96  443.58  6.5e-05       22.5%     56.77
  WD 3:  Seg 10   107-145     10.02  528.61  4.7e-06       37.5%     58.46
  WD 4:  Seg 14   149-184      5.45  339.90  0.00163       15.0%     50.63
  WD 5:  Seg 18   192-230      8.66  472.40  2.7e-05       30.0%     56.97
  WD 6:  Seg 22   234-273      6.63  388.63  0.00036       35.0%     52.76
  WD 7:  Seg 26   277-315      8.82  479.10  2.2e-05       20.0%     52.01

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   20-58     MEPGAVFRDYN---CRISSIDFHKTSTCMVTASD---DDSIRLYD
   WD 2   62-103    ATCLKTINSKK---YGVDLVCFTSHPTTVIYSSRNGWDDSLRLLS
   WD 3  107-145    NKYLRYFKGHH---DRVVSLSLCSGGECFISGSL---DRTVLLWD
   WD 4  149-184    EKCQGLLRVQG---R---PAAAYDDQGLIFAIAF---GGYIRMFD
   WD 5  192-230    PFEIFSVGGDL---SEANVVKFSNDGRLMLLTTM---DGFIHVLD
   WD 6  234-273    GTLLSTFSVKPVAGESTLDAAFSPEGMFVVSG-----DGSTHAWG
   WD 7  277-315    GKQVHSWMGLG---SEPPVIKWGPGSPMFVTGSS---ELAFVIPD

   WD40 Template    GECLRTLSGHT---SGVTSVSFSPDGKRLVSGSE---DGTIKVWD