Input parameters:

  Query = AT5G66240.2 (Len=331)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G66240.2, Len=331):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVEFTEREDRVSLELSEEIIQSMEPGAVFRDYNCRISSIDFHKTSTCMVTASDDDSIRLYDVASATCLKTINSKKYGVDL 80  
WD40-rpts                            (_________________WD 1________________)   (_______________

Query       81 VCFTSHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVVSLSLCSGGECFISGSLDRTVLLWDQRVEKCQGLLRV 160 
WD40-rpts      ___WD 2__________________)   (_________________WD 3________________)(___________

Query      161 QGRPAAAYDDQGLIFAIAFGGYIRMFDARMYEKGPFEIFSVGGDLSEANVVKFSNDGRLMLLTTMDGFIHVLDSFRGTLL 240 
WD40-rpts      ______WD 4________________)       (_________________WD 5________________)   (___

Query      241 STFSVKPVAGESTLDAAFSPEGMFVVSGSGDGSTHAWGVRSGKQVHSWMGLGSEPPVIKWGPGSPMFVTGSSELAFVIPD 320 
WD40-rpts      _______________WD 6__________________)   (_________________WD 7________________)

Query      321 LSKLPAYAIRK 331 
WD40-rpts                 

7 WD40-repeats found in QUERY=AT5G66240.2 (Len=331):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    23-61       9.04  488.26  1.6e-05       20.0%     51.46
  WD 2:  Seg  7    65-106      7.97  443.93  6.5e-05       22.5%     56.75
  WD 3:  Seg 11   110-148     10.01  528.32  4.7e-06       37.5%     55.65
  WD 4:  Seg 15   149-187      5.12  326.09  0.00251       12.5%     45.94
  WD 5:  Seg 19   195-233      8.62  470.60  2.8e-05       30.0%     57.27
  WD 6:  Seg 23   237-278      8.64  471.49  2.7e-05       37.5%     56.61
  WD 7:  Seg 27   282-320      8.82  479.11  2.2e-05       20.0%     46.19

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-61     -MEPGAVFRDYN---CRISSIDFHKTSTCMVTASD---DDSIRLYD
   WD 2   65-106    -ATCLKTINSKK---YGVDLVCFTSHPTTVIYSSRNGWDDSLRLLS
   WD 3  110-148    -NKYLRYFKGHH---DRVVSLSLCSGGECFISGSL---DRTVLLWD
   WD 4  149-187    QRVEKCQGLLRV---QGRPAAAYDDQG-LIFAIAF---GGYIRMFD
   WD 5  195-233    -PFEIFSVGGDL---SEANVVKFSNDGRLMLLTTM---DGFIHVLD
   WD 6  237-278    -GTLLSTFSVKPVAGESTLDAAFSPEGMFVVSGSG---DGSTHAWG
   WD 7  282-320    -GKQVHSWMGLG---SEPPVIKWGPGSPMFVTGSS---ELAFVIPD

   WD40 Template    TGECLRTLSGHT---SGVTSVSFSPDGKRLVSGSE---DGTIKVWD