Input parameters:

  Query = AT5G66240.1 (Len=328)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G66240.1, Len=328):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVEREDRVSLELSEEIIQSMEPGAVFRDYNCRISSIDFHKTSTCMVTASDDDSIRLYDVASATCLKTINSKKYGVDLVCF 80  
WD40-rpts                         (_________________WD 1________________)   (__________________

Query       81 TSHPTTVIYSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVVSLSLCSGGECFISGSLDRTVLLWDQRVEKCQGLLRVQGR 160 
WD40-rpts      WD 2__________________)   (_________________WD 3________________)   (___________

Query      161 PAAAYDDQGLIFAIAFGGYIRMFDARMYEKGPFEIFSVGGDLSEANVVKFSNDGRLMLLTTMDGFIHVLDSFRGTLLSTF 240 
WD40-rpts      ____WD 4_______________)       (_________________WD 5________________)   (______

Query      241 SVKPVAGESTLDAAFSPEGMFVVSGSGDGSTHAWGVRSGKQVHSWMGLGSEPPVIKWGPGSPMFVTGSSELAFVIPDLSK 320 
WD40-rpts      ____________WD 6__________________)   (_________________WD 7________________)   

Query      321 LPAYAIRK 328 
WD40-rpts              

7 WD40-repeats found in QUERY=AT5G66240.1 (Len=328):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    20-58       9.10  490.67  1.5e-05       20.0%     54.09
  WD 2:  Seg  6    62-103      7.96  443.43  6.6e-05       22.5%     56.81
  WD 3:  Seg 10   107-145     10.05  529.84  4.5e-06       37.5%     58.31
  WD 4:  Seg 14   149-184      5.48  341.05  0.00158       15.0%     50.72
  WD 5:  Seg 18   192-230      8.65  471.80  2.7e-05       30.0%     57.41
  WD 6:  Seg 22   234-275      8.61  470.21  2.9e-05       37.5%     58.21
  WD 7:  Seg 26   279-317      8.89  481.72  2.0e-05       20.0%     49.99

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   20-58     MEPGAVFRDYN---CRISSIDFHKTSTCMVTASD---DDSIRLYD
   WD 2   62-103    ATCLKTINSKK---YGVDLVCFTSHPTTVIYSSRNGWDDSLRLLS
   WD 3  107-145    NKYLRYFKGHH---DRVVSLSLCSGGECFISGSL---DRTVLLWD
   WD 4  149-184    EKCQGLLRVQG---R---PAAAYDDQGLIFAIAF---GGYIRMFD
   WD 5  192-230    PFEIFSVGGDL---SEANVVKFSNDGRLMLLTTM---DGFIHVLD
   WD 6  234-275    GTLLSTFSVKPVAGESTLDAAFSPEGMFVVSGSG---DGSTHAWG
   WD 7  279-317    GKQVHSWMGLG---SEPPVIKWGPGSPMFVTGSS---ELAFVIPD

   WD40 Template    GECLRTLSGHT---SGVTSVSFSPDGKRLVSGSE---DGTIKVWD